Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   D3A95_RS08775 Genome accession   NZ_CP032152
Coordinates   1793583..1795280 (+) Length   565 a.a.
NCBI ID   WP_181494682.1    Uniprot ID   -
Organism   Thermosynechococcus sichuanensis E542     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1788583..1800280
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3A95_RS08750 (D3A95_08860) - 1788966..1789667 (-) 702 WP_181494677.1 PilN domain-containing protein -
  D3A95_RS08755 (D3A95_08865) pilM 1789679..1790758 (-) 1080 WP_233838309.1 type IV pilus biogenesis protein PilM Machinery gene
  D3A95_RS08760 (D3A95_08870) - 1791021..1791602 (-) 582 WP_181494679.1 L,D-transpeptidase -
  D3A95_RS08765 (D3A95_08875) - 1791632..1792063 (-) 432 WP_181494680.1 hypothetical protein -
  D3A95_RS08770 (D3A95_08880) - 1792232..1793461 (-) 1230 WP_181494681.1 acetate/propionate family kinase -
  D3A95_RS08775 (D3A95_08885) comA 1793583..1795280 (+) 1698 WP_181494682.1 phospholipase D-like domain-containing protein Machinery gene
  D3A95_RS08780 (D3A95_08890) - 1795311..1795823 (-) 513 WP_181494683.1 adenine phosphoribosyltransferase -
  D3A95_RS08785 (D3A95_08895) - 1795873..1797177 (-) 1305 WP_233838311.1 NCS2 family permease -
  D3A95_RS08790 (D3A95_08900) - 1797553..1799274 (+) 1722 WP_181494685.1 hypothetical protein -
  D3A95_RS08795 (D3A95_08905) - 1799292..1800083 (+) 792 WP_181494686.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63006.64 Da        Isoelectric Point: 9.4354

>NTDB_id=314125 D3A95_RS08775 WP_181494682.1 1793583..1795280(+) (comA) [Thermosynechococcus sichuanensis E542]
MFWQRLKWRRHGGYLLLFLLGLLIAAVVLTQWRSHPLIRPALEPLPQYPQIAVHMNHSQAHRYQEPYRPYTREGEDLEAI
MIAQIAKAQKTIDVAVQEFRLPNLAKALAARQQAGVRVRVVMENTYTAPWATYSAAQVSAMDARMRERYNDWKALVDTNG
DGQLSAAELRDRDVQTILNEAKIPWIDDTADGSKGSLLMHHKFIVIDDRQVIATTANFTLSDVHGDLGRPDTRGNANSLL
VIDSPAVARLFTEEFNIMWGDGPGGQPNSRFGVKKPVRPPQRVAVGDAMVTVRFSPTPRSQPWAVSTNGLIGQTLSRSRQ
SIDLALFVFSDQELSNVLEERHNQGVSIRALIDSGFIYRDFSEALDMMGVAMANTAQARQGNCYYEAGNRPWQNPIQTVG
TPLLPEGDKLHHKYGVVDDRTVIVGSHNWSEAANRGNDEFLLVIEHPTVAAHYKREFERLYSNSRLGLPQHIRDRIQQQL
IACGGKIATRPAPASGNRASTPTARVNLNTATAAELQTLPGVGPKLAAEIIRAREQKPFQSLADLDAVPGVGPKLLERLR
DRVTW

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=314125 D3A95_RS08775 WP_181494682.1 1793583..1795280(+) (comA) [Thermosynechococcus sichuanensis E542]
GTGTTTTGGCAAAGGCTTAAATGGCGGCGCCACGGTGGGTATCTACTCTTGTTTCTGCTGGGGCTGTTGATTGCGGCTGT
GGTGCTCACCCAATGGCGATCGCACCCGCTTATCCGCCCTGCCCTAGAGCCGCTGCCTCAGTATCCGCAAATTGCGGTGC
ATATGAATCATTCCCAAGCCCACCGTTACCAAGAACCCTATCGCCCCTATACCCGTGAAGGGGAAGACCTTGAGGCAATC
ATGATTGCCCAGATTGCCAAAGCCCAAAAGACCATTGATGTGGCGGTGCAGGAGTTTCGCCTACCGAATCTGGCCAAGGC
TCTAGCAGCACGGCAGCAGGCAGGGGTACGGGTACGGGTGGTGATGGAGAATACCTACACTGCCCCTTGGGCAACCTACA
GTGCTGCGCAAGTGAGTGCCATGGATGCAAGAATGCGGGAGCGCTATAACGACTGGAAAGCGCTGGTGGATACCAACGGT
GATGGCCAACTCAGTGCCGCCGAACTGCGCGATCGCGATGTGCAGACAATTCTCAATGAGGCGAAGATTCCTTGGATTGA
TGACACTGCTGATGGCTCCAAAGGCAGTCTGCTCATGCACCACAAGTTCATTGTGATTGACGATCGCCAAGTGATTGCGA
CGACGGCCAACTTTACCCTCAGTGATGTCCACGGTGACTTGGGACGACCCGATACCCGTGGTAATGCCAACTCCCTCTTG
GTGATTGATAGCCCCGCGGTGGCACGCCTATTTACTGAGGAATTTAACATTATGTGGGGCGATGGTCCCGGTGGTCAGCC
CAATAGTCGCTTTGGGGTCAAAAAGCCAGTGCGACCCCCTCAACGGGTGGCGGTGGGTGATGCCATGGTGACGGTGCGCT
TTTCACCAACCCCGCGATCGCAACCTTGGGCGGTCTCTACCAACGGCCTCATTGGTCAAACCCTCAGCCGCAGTCGCCAA
AGCATTGATCTCGCGCTCTTTGTTTTCTCCGATCAGGAGTTGTCCAACGTGCTTGAGGAACGCCACAACCAAGGGGTGAG
CATCCGCGCCCTCATTGACTCAGGATTTATCTACCGTGACTTTAGCGAAGCCCTCGATATGATGGGCGTGGCGATGGCCA
ATACGGCCCAAGCCCGTCAAGGCAACTGTTACTACGAAGCCGGCAACCGCCCGTGGCAAAACCCGATTCAAACGGTGGGC
ACTCCCCTATTGCCGGAGGGGGATAAGCTGCACCATAAGTACGGCGTTGTGGACGATCGCACCGTGATTGTGGGTTCCCA
CAACTGGTCAGAGGCGGCCAATCGTGGTAACGATGAATTCTTGCTGGTGATTGAGCATCCCACCGTAGCGGCTCACTACA
AACGGGAGTTTGAGCGCCTGTATAGCAATAGTCGTCTAGGTCTGCCGCAGCACATTCGCGATCGCATTCAGCAGCAGTTG
ATCGCCTGTGGCGGTAAGATTGCCACTCGACCTGCCCCTGCTTCAGGAAATCGTGCCAGCACGCCTACCGCACGGGTAAA
TTTGAACACGGCCACTGCCGCTGAACTGCAAACCTTACCGGGCGTCGGACCAAAGCTAGCGGCTGAAATTATCCGTGCCC
GCGAGCAGAAGCCCTTTCAATCCTTGGCGGATTTAGATGCCGTCCCCGGTGTCGGGCCGAAGCTCCTCGAACGCTTGCGC
GATCGCGTGACGTGGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(505-564)

PLD-like domain (PLDc_2)

(313-460)

PLD-like domain (PLDc_2)

(82-259)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

48.837

98.938

0.483

Multiple sequence alignment