Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   D3A95_RS02330 Genome accession   NZ_CP032152
Coordinates   495360..495722 (-) Length   120 a.a.
NCBI ID   WP_181496043.1    Uniprot ID   A0A3B7M9W0
Organism   Thermosynechococcus sichuanensis E542     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 490360..500722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3A95_RS02305 (D3A95_02365) - 490723..491478 (+) 756 WP_181496035.1 MBL fold metallo-hydrolase -
  D3A95_RS02310 (D3A95_02370) - 491481..491972 (+) 492 WP_220131059.1 phosphate-starvation-inducible PsiE family protein -
  D3A95_RS02315 (D3A95_02375) - 491949..492812 (-) 864 WP_181496037.1 prephenate/arogenate dehydrogenase -
  D3A95_RS02320 (D3A95_02380) - 492966..494093 (+) 1128 WP_181496039.1 HhoA/HhoB/HtrA family serine endopeptidase -
  D3A95_RS02325 (D3A95_02385) - 494095..495357 (+) 1263 WP_181496041.1 phospholipid carrier-dependent glycosyltransferase -
  D3A95_RS02330 (D3A95_02390) pilH 495360..495722 (-) 363 WP_181496043.1 response regulator transcription factor Machinery gene
  D3A95_RS02335 (D3A95_02395) - 495846..496706 (-) 861 WP_181496045.1 energy-coupling factor ABC transporter ATP-binding protein -
  D3A95_RS02340 (D3A95_02400) cbiQ 496708..497496 (-) 789 WP_181496047.1 cobalt ECF transporter T component CbiQ -
  D3A95_RS02345 (D3A95_02405) - 497504..497803 (-) 300 WP_181496049.1 energy-coupling factor ABC transporter substrate-binding protein -
  D3A95_RS02350 (D3A95_02410) - 497796..498572 (-) 777 WP_181496051.1 energy-coupling factor ABC transporter permease -
  D3A95_RS02355 (D3A95_02415) - 498810..499115 (+) 306 WP_181496053.1 cell division protein SepF -
  D3A95_RS02360 (D3A95_02420) - 499123..499509 (+) 387 WP_181496055.1 hypothetical protein -
  D3A95_RS02365 (D3A95_02425) recF 499448..500587 (-) 1140 WP_181496057.1 DNA replication/repair protein RecF -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13509.74 Da        Isoelectric Point: 4.5033

>NTDB_id=314113 D3A95_RS02330 WP_181496043.1 495360..495722(-) (pilH) [Thermosynechococcus sichuanensis E542]
MATIMVVDDSPTLRAMIVELMKEQHYDVVEAEDGVEAQEKIKAQCPDLVILDIVMPRMNGYELCRWIKGEAASQNVPVIM
CTTKSEEFDIHWGKKQGVDAYITKPFDPAELIATVKRLLG

Nucleotide


Download         Length: 363 bp        

>NTDB_id=314113 D3A95_RS02330 WP_181496043.1 495360..495722(-) (pilH) [Thermosynechococcus sichuanensis E542]
ATGGCCACAATTATGGTTGTTGATGACAGCCCCACCCTGCGGGCAATGATTGTTGAGCTAATGAAAGAGCAGCACTATGA
CGTTGTCGAGGCCGAGGATGGTGTCGAAGCCCAAGAAAAGATCAAGGCTCAATGTCCCGATTTAGTGATTCTGGACATCG
TGATGCCGCGCATGAATGGCTACGAACTGTGCCGCTGGATCAAAGGCGAAGCTGCCTCCCAAAATGTGCCTGTGATCATG
TGCACCACCAAAAGTGAGGAGTTTGATATTCACTGGGGCAAGAAGCAGGGGGTGGATGCCTACATCACCAAGCCCTTTGA
TCCTGCTGAACTCATTGCCACCGTCAAACGCCTCCTAGGATAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3B7M9W0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

56.303

99.167

0.558
  pilG Acinetobacter baumannii strain A118

42.105

95

0.4
  chpA Acinetobacter baumannii strain A118

41.379

96.667

0.4
  micA Streptococcus pneumoniae Cp1015

39.496

99.167

0.392
  vicR Streptococcus mutans UA159

37.931

96.667

0.367

Multiple sequence alignment