Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   D2M30_RS15670 Genome accession   NZ_CP032146
Coordinates   3075780..3076424 (-) Length   214 a.a.
NCBI ID   WP_014472195.1    Uniprot ID   A0AAP7N9U7
Organism   Bacillus amyloliquefaciens strain YP6     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3070780..3081424
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS15635 (D2M30_15650) - 3071965..3072396 (+) 432 WP_045509497.1 Na(+)/H(+) antiporter subunit B -
  D2M30_RS15640 (D2M30_15655) - 3072396..3072737 (+) 342 WP_013353388.1 Na(+)/H(+) antiporter subunit C -
  D2M30_RS15645 (D2M30_15660) - 3072730..3074211 (+) 1482 WP_065522134.1 Na+/H+ antiporter subunit D -
  D2M30_RS15650 (D2M30_15665) - 3074217..3074693 (+) 477 WP_013353390.1 Na+/H+ antiporter subunit E -
  D2M30_RS15655 (D2M30_15670) - 3074693..3074977 (+) 285 WP_045509491.1 Na(+)/H(+) antiporter subunit F1 -
  D2M30_RS15660 (D2M30_15675) mnhG 3074961..3075335 (+) 375 WP_045509488.1 monovalent cation/H(+) antiporter subunit G -
  D2M30_RS15665 (D2M30_15680) - 3075375..3075758 (-) 384 WP_045509485.1 hotdog fold thioesterase -
  D2M30_RS15670 (D2M30_15685) comA 3075780..3076424 (-) 645 WP_014472195.1 response regulator transcription factor Regulator
  D2M30_RS15675 (D2M30_15690) comP 3076505..3078796 (-) 2292 WP_088613350.1 histidine kinase Regulator
  D2M30_RS15680 (D2M30_15695) comX 3078808..3078972 (-) 165 WP_007613432.1 competence pheromone ComX -
  D2M30_RS15685 (D2M30_15700) - 3078972..3079883 (-) 912 WP_125123647.1 polyprenyl synthetase family protein -
  D2M30_RS15690 (D2M30_15705) degQ 3080035..3080175 (-) 141 WP_013353398.1 degradation enzyme regulation protein DegQ Regulator
  D2M30_RS15700 (D2M30_15715) - 3080640..3080981 (+) 342 WP_045509476.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24253.65 Da        Isoelectric Point: 4.9953

>NTDB_id=314045 D2M30_RS15670 WP_014472195.1 3075780..3076424(-) (comA) [Bacillus amyloliquefaciens strain YP6]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDLSGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLLTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=314045 D2M30_RS15670 WP_014472195.1 3075780..3076424(-) (comA) [Bacillus amyloliquefaciens strain YP6]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTTAGTCCCGATGCCAGTGAACAATTCGTTCTTCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAACCTGGGTGATGACCTCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGCAAAATC
ATTGTTTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCACGGCGCCATCAGCAAAAC
CGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTTAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGTTGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACACCGAGAGAGCGCCAT
ATTCTTCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCCGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGCACTGAAGCGGTGCTGATTGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(153-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

85.981

100

0.86

Multiple sequence alignment