Detailed information    

insolico Bioinformatically predicted

Overview


Name   htrA   Type   Regulator
Locus tag   SEZ_RS09510 Genome accession   NC_011134
Coordinates   2022054..2023277 (+) Length   407 a.a.
NCBI ID   WP_012516520.1    Uniprot ID   A0AAW3GJZ4
Organism   Streptococcus equi subsp. zooepidemicus MGCS10565     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2017054..2028277
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SEZ_RS09485 (Sez_1958) - 2017748..2020333 (+) 2586 WP_012516518.1 YfhO family protein -
  SEZ_RS09505 (Sez_1959) rlmH 2021365..2021844 (-) 480 WP_012516519.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  SEZ_RS09510 (Sez_1960) htrA 2022054..2023277 (+) 1224 WP_012516520.1 trypsin-like peptidase domain-containing protein Regulator
  SEZ_RS09515 (Sez_1961) spo0J 2023397..2024170 (+) 774 WP_012516521.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence


Protein


Download         Length: 407 a.a.        Molecular weight: 42434.01 Da        Isoelectric Point: 5.4809

>NTDB_id=31404 SEZ_RS09510 WP_012516520.1 2022054..2023277(+) (htrA) [Streptococcus equi subsp. zooepidemicus MGCS10565]
MLKSKNILKPLWVLAIGFLGGLLAALVVNGFSQNSLTSSNAKGATTTSNVSFNNTTDTTKAVKVVQDAVVSVINYQKAAS
PAISNPYINLFGEENDTSAVQKEDELSIHSEGSGVVYKKEGNTAYLVTNNHVIEGAQRIEILTADGSKIVGELVGADTYS
DLAVVKVAADKIKTIAKFADSTKINVGEVAIAIGSPLGTKYANSVTEGIVSSLSRTVTSRNEAGETISTNAIQTDAAINP
GNSGGPLINIEGQVIGINSSKISSTPTGSGGAIEGIGFAIPSSDVVTIINQLESNGAVIRPALGITMVNLSNLSTNALIQ
LNIPTSVTSGVVVASTQDGMPALGKLEQYDVITEVDGKEVSSISDLQSVLYSHEINDTIKVTFYRGTAKKKVDIKLTKTT
KDLTKKQ

Nucleotide


Download         Length: 1224 bp        

>NTDB_id=31404 SEZ_RS09510 WP_012516520.1 2022054..2023277(+) (htrA) [Streptococcus equi subsp. zooepidemicus MGCS10565]
GTGTTAAAATCAAAAAATATATTGAAGCCCTTATGGGTTTTAGCCATTGGATTTTTAGGGGGCTTATTAGCTGCCTTAGT
TGTTAATGGATTTAGTCAGAATTCTCTAACATCTTCAAATGCAAAGGGAGCAACGACAACAAGCAACGTCAGCTTTAATA
ATACAACTGATACAACAAAGGCTGTTAAGGTGGTTCAAGATGCTGTAGTGTCTGTTATTAACTATCAAAAGGCTGCTTCG
CCTGCCATTTCAAATCCTTACATCAATCTTTTCGGAGAAGAAAATGATACCTCAGCAGTACAAAAAGAGGACGAGCTAAG
CATACACAGTGAAGGCTCGGGTGTTGTCTACAAAAAAGAAGGAAATACTGCTTATCTTGTAACCAACAATCATGTTATTG
AGGGAGCTCAACGAATTGAAATTTTAACAGCAGACGGCTCTAAGATCGTTGGAGAACTAGTTGGTGCAGACACTTATTCT
GACCTAGCTGTTGTCAAAGTTGCTGCTGATAAAATCAAAACAATAGCCAAATTTGCAGATTCAACCAAAATTAATGTTGG
AGAGGTAGCCATTGCAATTGGTAGTCCTCTTGGAACAAAATATGCCAACTCAGTGACAGAAGGGATTGTTTCAAGTCTAA
GCCGTACAGTCACTTCAAGAAATGAGGCAGGCGAGACCATCTCAACAAATGCTATCCAAACTGATGCTGCTATCAATCCA
GGTAATTCAGGTGGACCACTCATCAATATTGAAGGCCAGGTTATTGGTATCAACTCAAGTAAAATATCCTCAACACCTAC
TGGTAGCGGCGGAGCCATTGAGGGAATTGGCTTTGCTATTCCATCAAGCGATGTTGTCACCATTATTAACCAACTAGAGT
CTAACGGAGCTGTTATCAGACCAGCCTTAGGCATTACAATGGTAAACTTAAGTAATCTATCAACCAATGCATTGATTCAA
TTGAATATTCCAACAAGCGTTACCAGCGGTGTTGTCGTAGCCTCTACTCAAGATGGCATGCCTGCTCTTGGTAAATTGGA
GCAGTATGATGTCATTACTGAGGTTGACGGTAAAGAAGTCAGCTCAATTAGTGACCTACAAAGTGTCTTATATAGTCATG
AGATTAACGACACCATTAAGGTAACCTTCTACAGAGGAACTGCTAAGAAGAAAGTTGACATCAAATTAACAAAAACAACT
AAGGATCTAACTAAAAAGCAGTAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  htrA Streptococcus mutans UA159

61.275

100

0.614

  htrA Streptococcus gordonii str. Challis substr. CH1

57.855

98.526

0.57

  htrA Streptococcus mitis NCTC 12261

54.66

97.543

0.533

  htrA Streptococcus pneumoniae Rx1

53.634

98.034

0.526

  htrA Streptococcus pneumoniae D39

53.634

98.034

0.526

  htrA Streptococcus pneumoniae R6

53.634

98.034

0.526

  htrA Streptococcus pneumoniae TIGR4

53.634

98.034

0.526


Multiple sequence alignment