Detailed information    

insolico Bioinformatically predicted

Overview

Name   nin/comJ   Type   Regulator
Locus tag   D2M30_RS01765 Genome accession   NZ_CP032146
Coordinates   322458..322856 (-) Length   132 a.a.
NCBI ID   WP_013350967.1    Uniprot ID   A0A9P1JDU7
Organism   Bacillus amyloliquefaciens strain YP6     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context

Location: 317458..327856
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2M30_RS01740 (D2M30_01740) - 317628..318830 (+) 1203 WP_125122030.1 GTP-binding protein -
  D2M30_RS01745 (D2M30_01745) - 318894..320030 (+) 1137 WP_125123582.1 zinc-dependent alcohol dehydrogenase -
  D2M30_RS01750 (D2M30_01750) - 320045..320479 (+) 435 WP_013350964.1 RDD family protein -
  D2M30_RS01755 (D2M30_01755) - 320552..320875 (+) 324 WP_013350965.1 YckD family protein -
  D2M30_RS01760 (D2M30_01760) - 320981..322417 (+) 1437 WP_125122031.1 glycoside hydrolase family 1 protein -
  D2M30_RS01765 (D2M30_01765) nin/comJ 322458..322856 (-) 399 WP_013350967.1 competence protein ComJ Regulator
  D2M30_RS01770 (D2M30_01770) nucA/comI 322877..323314 (-) 438 WP_013350968.1 NucA/NucB deoxyribonuclease domain-containing protein Machinery gene
  D2M30_RS20480 (D2M30_0363) - 323476..323664 (-) 189 WP_045508600.1 hypothetical protein -
  D2M30_RS01780 (D2M30_01780) hxlB 323661..324218 (-) 558 WP_125122032.1 6-phospho-3-hexuloisomerase -
  D2M30_RS01785 (D2M30_01785) hxlA 324215..324850 (-) 636 WP_045508592.1 3-hexulose-6-phosphate synthase -
  D2M30_RS01790 (D2M30_01790) - 325082..325444 (+) 363 WP_013350971.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 132 a.a.        Molecular weight: 14942.92 Da        Isoelectric Point: 4.4508

>NTDB_id=313992 D2M30_RS01765 WP_013350967.1 322458..322856(-) (nin/comJ) [Bacillus amyloliquefaciens strain YP6]
MIKSWKPQELTISYHQFTIFQKDSEPPVIDWTDEAIEKGYAEADDAVSFEAGRNTKAFIVLRLNTNEPVPSYEKKATVPF
EAVKDGIEIESVMSKRLFFDLPKGRYSLTCYSVPAEISDLHADTYIIDAAAM

Nucleotide


Download         Length: 399 bp        

>NTDB_id=313992 D2M30_RS01765 WP_013350967.1 322458..322856(-) (nin/comJ) [Bacillus amyloliquefaciens strain YP6]
TTGATTAAATCATGGAAACCGCAAGAACTGACCATTTCTTATCATCAATTTACAATCTTCCAAAAAGATTCAGAACCGCC
TGTTATCGATTGGACCGATGAAGCCATTGAAAAAGGATACGCGGAGGCTGACGATGCTGTTTCATTTGAAGCAGGGAGAA
ATACGAAGGCATTTATCGTCCTGAGGCTGAACACAAATGAGCCGGTGCCATCCTATGAGAAAAAAGCGACTGTTCCCTTC
GAGGCTGTAAAAGATGGGATTGAAATTGAAAGCGTGATGTCAAAAAGGCTTTTCTTCGATCTTCCGAAAGGCCGATACAG
CCTTACCTGTTATTCAGTGCCTGCCGAAATATCCGATCTTCATGCAGATACGTATATTATTGATGCGGCCGCAATGTAA

Domains

Predicted by InterproScan.

Competence protein J (ComJ) (ComJ)

(9-129)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

76.515

100

0.765

Multiple sequence alignment