Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   E3155_RS23985 Genome accession   NZ_CP038394
Coordinates   4933487..4934023 (-) Length   178 a.a.
NCBI ID   WP_000168305.1    Uniprot ID   A0A370V115
Organism   Escherichia coli O55:H7 strain DEC5A     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4928487..4939023
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E3155_RS23965 (E3155_24565) soxR 4930216..4930680 (-) 465 WP_000412428.1 redox-sensitive transcriptional activator SoxR -
  E3155_RS23970 (E3155_24570) soxS 4930766..4931089 (+) 324 WP_000019358.1 superoxide response transcriptional regulator SoxS -
  E3155_RS23975 (E3155_24575) pdeC 4931092..4932678 (-) 1587 WP_001016525.1 c-di-GMP phosphodiesterase PdeC -
  E3155_RS23980 (E3155_24580) yjcB 4933107..4933388 (+) 282 WP_001295689.1 YjcB family protein -
  E3155_RS23985 (E3155_24585) ssb 4933487..4934023 (-) 537 WP_000168305.1 single-stranded DNA-binding protein SSB1 Machinery gene
  E3155_RS23990 (E3155_24590) uvrA 4934278..4937100 (+) 2823 WP_000357763.1 excinuclease ABC subunit UvrA Machinery gene
  E3155_RS23995 (E3155_24595) yjbR 4937135..4937491 (-) 357 WP_000155657.1 MmcQ/YjbR family DNA-binding protein -
  E3155_RS24000 (E3155_24600) yjbQ 4937495..4937911 (-) 417 WP_000270375.1 secondary thiamine-phosphate synthase enzyme YjbQ -
  E3155_RS24005 (E3155_24605) aphA 4938022..4938735 (-) 714 WP_001418331.1 acid phosphatase AphA -

Sequence

Protein


Download         Length: 178 a.a.        Molecular weight: 18975.00 Da        Isoelectric Point: 5.2358

>NTDB_id=313888 E3155_RS23985 WP_000168305.1 4933487..4934023(-) (ssb) [Escherichia coli O55:H7 strain DEC5A]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKATGEMKEQTEWHRVVLFGKLAEVASEYLRKGSQVYI
EGQLRTRKWTDQSGQDRYTTEVVVNVGGTMQMLGGRQGGGAPAGGNIGGGQPQGGWGQPQQPQGGNQFSGGAQSRPQQSA
PAAPSNEPPMDFDDDIPF

Nucleotide


Download         Length: 537 bp        

>NTDB_id=313888 E3155_RS23985 WP_000168305.1 4933487..4934023(-) (ssb) [Escherichia coli O55:H7 strain DEC5A]
ATGGCCAGCAGAGGCGTAAACAAGGTTATTCTCGTTGGTAATCTGGGTCAGGACCCGGAAGTACGCTACATGCCAAATGG
TGGCGCAGTTGCCAACATTACGCTGGCTACTTCCGAATCCTGGCGTGATAAAGCGACCGGCGAGATGAAAGAGCAGACTG
AATGGCACCGCGTTGTGCTGTTCGGCAAACTGGCAGAAGTGGCCAGCGAATATCTGCGTAAAGGTTCTCAGGTTTATATC
GAAGGTCAGCTGCGTACCCGTAAATGGACCGATCAATCCGGTCAGGATCGCTACACCACAGAAGTCGTGGTGAACGTTGG
CGGCACCATGCAGATGCTGGGTGGTCGTCAGGGTGGTGGCGCTCCTGCAGGTGGCAATATCGGTGGTGGTCAGCCGCAGG
GCGGTTGGGGTCAGCCTCAGCAGCCGCAGGGTGGCAATCAGTTCAGCGGCGGCGCGCAGTCTCGCCCGCAGCAGTCCGCT
CCGGCAGCGCCGTCTAACGAGCCGCCGATGGACTTTGATGACGATATTCCGTTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A370V115

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

74.444

100

0.753
  ssb Glaesserella parasuis strain SC1401

57.923

100

0.596
  ssb Neisseria meningitidis MC58

48.066

100

0.489
  ssb Neisseria gonorrhoeae MS11

48.066

100

0.489