Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   D3C60_RS00250 Genome accession   NZ_CP032144
Coordinates   45956..46246 (-) Length   96 a.a.
NCBI ID   WP_169510469.1    Uniprot ID   -
Organism   Bacillus velezensis strain BIM B-439D     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 40956..51246
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D3C60_RS00210 (D3C60_00210) darA 40973..41302 (+) 330 WP_004264734.1 cyclic di-AMP receptor DarA -
  D3C60_RS00215 (D3C60_00215) - 41315..41755 (+) 441 WP_004264730.1 DUF327 family protein -
  D3C60_RS00220 (D3C60_00220) holB 41767..42756 (+) 990 WP_007409919.1 DNA polymerase III subunit delta' -
  D3C60_RS00225 (D3C60_00225) ricT 42759..43586 (+) 828 WP_004264723.1 competence/sporulation regulator complex protein RicT -
  D3C60_RS00230 (D3C60_00230) yabA 43601..43960 (+) 360 WP_004264720.1 replication initiation-control protein YabA -
  D3C60_RS00235 (D3C60_00235) - 44021..44764 (+) 744 WP_007409920.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  D3C60_RS00240 (D3C60_00240) - 44751..45050 (+) 300 WP_007409921.1 GIY-YIG nuclease family protein -
  D3C60_RS00245 (D3C60_00245) rsmI 45025..45906 (+) 882 WP_020953847.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  D3C60_RS00250 (D3C60_00250) abrB 45956..46246 (-) 291 WP_169510469.1 transition state genes transcriptional regulator AbrB Regulator
  D3C60_RS00255 (D3C60_00255) metG 46730..48721 (+) 1992 WP_032868381.1 methionine--tRNA ligase -
  D3C60_RS00260 (D3C60_00260) - 48797..49564 (+) 768 WP_032868379.1 TatD family hydrolase -
  D3C60_RS00265 (D3C60_00265) - 49699..51024 (+) 1326 WP_023356663.1 G5 and 3D domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10753.57 Da        Isoelectric Point: 6.3482

>NTDB_id=313889 D3C60_RS00250 WP_169510469.1 45956..46246(-) (abrB) [Bacillus velezensis strain BIM B-439D]
MLMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNQK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=313889 D3C60_RS00250 WP_169510469.1 45956..46246(-) (abrB) [Bacillus velezensis strain BIM B-439D]
CTGTTAATGAAATCTACTGGTATCGTACGTAAAGTTGATGAACTTGGACGCGTCGTTATCCCTATCGAACTTCGCCGTAC
ACTGGGCATCGCAGAAAAAGACGCTCTTGAAATTTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCCGGCGGCAAATTGGTACTCAGCAAAGAAGGC
GCTGAGCAAATCATCTCTGAAATTCAAAACCAGCTTCAAAACCAAAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

97.917

100

0.979

Multiple sequence alignment