Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | D1115_RS01890 | Genome accession | NZ_CP032093 |
| Coordinates | 373347..373880 (+) | Length | 177 a.a. |
| NCBI ID | WP_128810047.1 | Uniprot ID | - |
| Organism | Vibrio alfacsensis strain CAIM 1831 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 368347..378880
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1115_RS01875 (D1115_01880) | uvrA | 368397..371219 (-) | 2823 | WP_128810045.1 | excinuclease ABC subunit UvrA | - |
| D1115_RS01880 (D1115_01885) | galU | 371398..372261 (-) | 864 | Protein_299 | UTP--glucose-1-phosphate uridylyltransferase GalU | - |
| D1115_RS01885 (D1115_01890) | qstR | 372425..373069 (-) | 645 | WP_128810046.1 | LuxR C-terminal-related transcriptional regulator | Regulator |
| D1115_RS01890 (D1115_01895) | ssb | 373347..373880 (+) | 534 | WP_128810047.1 | single-stranded DNA-binding protein | Machinery gene |
| D1115_RS01895 (D1115_01900) | csrD | 374097..376106 (+) | 2010 | WP_128810048.1 | RNase E specificity factor CsrD | - |
| D1115_RS01900 (D1115_01905) | - | 376118..377566 (+) | 1449 | WP_128810049.1 | MSHA biogenesis protein MshI | - |
| D1115_RS01905 (D1115_01910) | gspM | 377563..378213 (+) | 651 | WP_128810050.1 | type II secretion system protein GspM | - |
| D1115_RS01910 (D1115_01915) | - | 378206..378538 (+) | 333 | WP_128810051.1 | MSHA biogenesis protein MshK | - |
Sequence
Protein
Download Length: 177 a.a. Molecular weight: 19804.86 Da Isoelectric Point: 4.8950
>NTDB_id=313684 D1115_RS01890 WP_128810047.1 373347..373880(+) (ssb) [Vibrio alfacsensis strain CAIM 1831]
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRAQGGAPMGGQQQQQQQGSWGQPQQPAQQQYNAPQQQQQAPQQP
QQQYNEPPMDFDDDIPF
MASRGINKVILVGNLGNDPEIRYMPNGGAVANITIATSDSWRDKATGEQREKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGQLQTRKWQNQQGQDQYTTEVVVQGFNGVMQMLGGRAQGGAPMGGQQQQQQQGSWGQPQQPAQQQYNAPQQQQQAPQQP
QQQYNEPPMDFDDDIPF
Nucleotide
Download Length: 534 bp
>NTDB_id=313684 D1115_RS01890 WP_128810047.1 373347..373880(+) (ssb) [Vibrio alfacsensis strain CAIM 1831]
ATGGCCAGCCGTGGAATTAACAAAGTTATCTTAGTGGGAAATCTTGGCAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAATATTACTATTGCTACCTCTGACTCATGGCGCGATAAAGCGACTGGTGAACAGCGCGAAAAAACGG
AATGGCACCGTGTAGTGCTATTCGGTAAGCTAGCTGAAGTAGCAGGTGAATACCTACGTAAAGGCTCACAAGTTTACATT
GAGGGTCAATTGCAAACACGTAAGTGGCAAAACCAACAAGGCCAAGATCAGTACACAACAGAAGTTGTAGTACAAGGTTT
TAATGGCGTTATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCAATGGGTGGTCAACAACAACAGCAGCAACAAG
GTAGTTGGGGTCAGCCACAACAACCTGCACAGCAGCAGTACAATGCACCACAACAGCAGCAACAGGCTCCGCAGCAACCA
CAGCAGCAATACAATGAGCCACCAATGGATTTTGATGACGACATTCCGTTCTAA
ATGGCCAGCCGTGGAATTAACAAAGTTATCTTAGTGGGAAATCTTGGCAATGACCCAGAAATTCGTTACATGCCTAATGG
CGGTGCAGTAGCAAATATTACTATTGCTACCTCTGACTCATGGCGCGATAAAGCGACTGGTGAACAGCGCGAAAAAACGG
AATGGCACCGTGTAGTGCTATTCGGTAAGCTAGCTGAAGTAGCAGGTGAATACCTACGTAAAGGCTCACAAGTTTACATT
GAGGGTCAATTGCAAACACGTAAGTGGCAAAACCAACAAGGCCAAGATCAGTACACAACAGAAGTTGTAGTACAAGGTTT
TAATGGCGTTATGCAAATGCTTGGTGGCCGTGCTCAAGGTGGCGCTCCAATGGGTGGTCAACAACAACAGCAGCAACAAG
GTAGTTGGGGTCAGCCACAACAACCTGCACAGCAGCAGTACAATGCACCACAACAGCAGCAACAGGCTCCGCAGCAACCA
CAGCAGCAATACAATGAGCCACCAATGGATTTTGATGACGACATTCCGTTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Vibrio cholerae strain A1552 |
78.771 |
100 |
0.797 |
| ssb | Glaesserella parasuis strain SC1401 |
55.789 |
100 |
0.599 |
| ssb | Neisseria meningitidis MC58 |
46.667 |
100 |
0.475 |
| ssb | Neisseria gonorrhoeae MS11 |
46.667 |
100 |
0.475 |