Detailed information    

insolico Bioinformatically predicted

Overview

Name   qstR   Type   Regulator
Locus tag   D1115_RS01885 Genome accession   NZ_CP032093
Coordinates   372425..373069 (-) Length   214 a.a.
NCBI ID   WP_128810046.1    Uniprot ID   -
Organism   Vibrio alfacsensis strain CAIM 1831     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 367425..378069
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1115_RS01875 (D1115_01880) uvrA 368397..371219 (-) 2823 WP_128810045.1 excinuclease ABC subunit UvrA -
  D1115_RS01880 (D1115_01885) galU 371398..372261 (-) 864 Protein_299 UTP--glucose-1-phosphate uridylyltransferase GalU -
  D1115_RS01885 (D1115_01890) qstR 372425..373069 (-) 645 WP_128810046.1 LuxR C-terminal-related transcriptional regulator Regulator
  D1115_RS01890 (D1115_01895) ssb 373347..373880 (+) 534 WP_128810047.1 single-stranded DNA-binding protein Machinery gene
  D1115_RS01895 (D1115_01900) csrD 374097..376106 (+) 2010 WP_128810048.1 RNase E specificity factor CsrD -
  D1115_RS01900 (D1115_01905) - 376118..377566 (+) 1449 WP_128810049.1 MSHA biogenesis protein MshI -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24682.66 Da        Isoelectric Point: 9.4033

>NTDB_id=313683 D1115_RS01885 WP_128810046.1 372425..373069(-) (qstR) [Vibrio alfacsensis strain CAIM 1831]
MKKSAYARKLFLVSVEKHAERKVEAIEKYMDIEIPVITTDALMEANPTHRNKILVIDYAEHKYLIQSIKNLPLIWKNFET
VVFNVPKRLTTDDLLTLGQLKGIFYQYQSTEQVGEGLMGIINGQNWLPRNVTSQLLHYYRNVINTHTAPATVDLTIRELQ
VLRCLQAGSSNIQMAEDLFVSEFTIKSHLYQIFKKLSVKNRVQAIAWADQNLMS

Nucleotide


Download         Length: 645 bp        

>NTDB_id=313683 D1115_RS01885 WP_128810046.1 372425..373069(-) (qstR) [Vibrio alfacsensis strain CAIM 1831]
GTGAAAAAATCAGCTTACGCGAGAAAACTGTTTCTTGTCAGCGTAGAAAAACATGCTGAAAGAAAAGTAGAAGCGATAGA
GAAATACATGGATATCGAGATCCCGGTCATTACTACGGATGCCTTGATGGAGGCGAATCCTACACACCGCAACAAGATAT
TAGTGATTGACTATGCTGAACACAAATACCTGATTCAATCTATAAAGAACCTACCGTTGATTTGGAAGAACTTTGAGACC
GTCGTGTTCAACGTCCCAAAACGTCTCACCACTGATGACTTGCTGACACTCGGACAGCTAAAAGGTATTTTCTACCAGTA
CCAATCCACAGAACAAGTTGGTGAGGGACTCATGGGTATTATCAATGGGCAAAACTGGTTACCAAGAAATGTCACAAGCC
AACTGCTCCATTACTATCGCAATGTGATCAATACACATACGGCGCCAGCAACCGTTGATTTAACTATCCGTGAGCTCCAA
GTGCTTCGCTGTTTGCAAGCAGGCTCTTCAAACATTCAAATGGCGGAAGATCTTTTCGTCAGTGAATTCACCATCAAGTC
ACACTTGTATCAGATTTTTAAGAAGCTTTCGGTAAAAAATCGTGTTCAAGCAATCGCTTGGGCAGATCAGAACCTAATGT
CTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(154-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  qstR Vibrio campbellii strain DS40M4

85.047

100

0.85
  qstR Vibrio parahaemolyticus RIMD 2210633

83.645

100

0.836
  qstR Vibrio cholerae strain A1552

52.336

100

0.523

Multiple sequence alignment