Detailed information    

insolico Bioinformatically predicted

Overview

Name   coiA   Type   Machinery gene
Locus tag   D2E16_RS08045 Genome accession   NZ_CP032064
Coordinates   1663507..1664448 (-) Length   313 a.a.
NCBI ID   WP_192369004.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1658507..1669448
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS08020 (D2E16_08265) prsA 1658614..1659615 (-) 1002 WP_192369007.1 peptidylprolyl isomerase PrsA -
  D2E16_RS08025 (D2E16_08270) - 1659678..1660397 (-) 720 WP_044672599.1 O-methyltransferase -
  D2E16_RS08030 (D2E16_08275) - 1660472..1661020 (-) 549 WP_192369006.1 DUF6630 family protein -
  D2E16_RS08035 (D2E16_08280) - 1661031..1661474 (-) 444 WP_029944326.1 hypothetical protein -
  D2E16_RS08040 (D2E16_08285) pepF 1661476..1663278 (-) 1803 WP_192369005.1 oligoendopeptidase F Regulator
  D2E16_RS08045 (D2E16_08290) coiA 1663507..1664448 (-) 942 WP_192369004.1 competence protein CoiA Machinery gene
  D2E16_RS08050 (D2E16_08295) metG 1664509..1666512 (-) 2004 WP_192369003.1 methionine--tRNA ligase -
  D2E16_RS08055 (D2E16_08300) - 1666721..1667470 (-) 750 WP_192369002.1 hypothetical protein -

Sequence

Protein


Download         Length: 313 a.a.        Molecular weight: 36271.09 Da        Isoelectric Point: 8.6153

>NTDB_id=313534 D2E16_RS08045 WP_192369004.1 1663507..1664448(-) (coiA) [Streptococcus suis strain YSJ17]
MLVALDEDGQVFNVLENPAPQGSFSCPGCGGPVRYKSGKVLRSHFAHVTLRDCHYFSENESAQHLSLKSCLYSWLIKAEQ
VDLEKCLPQIGQIADLLVNDHLVVEVQCSSLPISRLQARTKAYHEAGFQVLWLLGKGLWIKERLSKLHKQFLSFSMNMGF
YIWELDDEKKELRLRYLIHEDLRGKVHCLTKVFPFGEGNLLEILRLPFAKQALSHLTCPLDRDLPRYIAQQLYYKSPNWL
ALQAESYSRGENLLTKTAEEWYPHIRLPRSAIGFAQIKQDLTPIYQAFDLFYDKAKDKRKQILYPPIIYRKPM

Nucleotide


Download         Length: 942 bp        

>NTDB_id=313534 D2E16_RS08045 WP_192369004.1 1663507..1664448(-) (coiA) [Streptococcus suis strain YSJ17]
ATGTTAGTAGCACTTGATGAAGATGGGCAAGTTTTTAATGTCTTGGAAAATCCTGCGCCGCAAGGCAGTTTTTCCTGTCC
AGGTTGTGGAGGACCGGTCCGATACAAATCTGGAAAAGTTCTGCGTTCGCACTTTGCCCATGTAACCCTGCGGGACTGCC
ACTATTTTTCCGAGAATGAGTCAGCCCAGCACCTGTCACTTAAGTCTTGTCTGTACAGTTGGTTAATCAAAGCCGAACAA
GTTGACCTTGAAAAATGCCTGCCACAGATTGGTCAGATAGCGGATTTATTGGTCAATGATCATTTGGTTGTGGAAGTCCA
ATGTTCCAGTCTGCCCATTTCACGCTTGCAGGCGAGAACAAAAGCCTATCATGAAGCTGGTTTTCAGGTTCTCTGGCTGT
TGGGAAAAGGCCTATGGATAAAAGAAAGATTAAGTAAATTACATAAGCAATTTCTCTCTTTTAGTATGAACATGGGTTTC
TACATTTGGGAGTTGGATGACGAGAAGAAGGAATTGCGTCTTCGTTACCTTATTCACGAAGACTTACGAGGTAAGGTCCA
CTGTCTGACAAAGGTTTTTCCATTTGGCGAGGGAAATTTATTGGAAATCTTGCGTCTGCCTTTTGCCAAGCAAGCTTTAT
CGCATCTTACTTGCCCGTTAGATAGGGATTTGCCTCGCTACATTGCTCAACAGCTTTATTACAAATCCCCCAATTGGTTA
GCCCTGCAGGCAGAGTCTTATAGCCGAGGGGAGAATTTGCTGACAAAGACGGCAGAAGAATGGTATCCCCACATCCGTCT
ACCCCGCTCTGCCATTGGCTTTGCCCAAATCAAGCAAGACCTGACACCGATTTACCAAGCATTTGATCTGTTTTACGACA
AAGCAAAAGATAAGAGAAAACAAATCTTGTATCCACCTATCATTTATAGAAAACCAATGTAA

Domains

Predicted by InterproScan.

Competence protein CoiA-like family (CoiA_nuc)

(21-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  coiA Streptococcus mitis NCTC 12261

52.885

99.681

0.527
  coiA Streptococcus pneumoniae TIGR4

51.282

99.681

0.511
  coiA Streptococcus pneumoniae Rx1

51.282

99.681

0.511
  coiA Streptococcus pneumoniae D39

51.282

99.681

0.511
  coiA Streptococcus pneumoniae R6

51.282

99.681

0.511
  coiA Lactococcus lactis subsp. cremoris KW2

41.875

100

0.428

Multiple sequence alignment