Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   D2E16_RS08040 Genome accession   NZ_CP032064
Coordinates   1661476..1663278 (-) Length   600 a.a.
NCBI ID   WP_192369005.1    Uniprot ID   -
Organism   Streptococcus suis strain YSJ17     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656476..1668278
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D2E16_RS08015 (D2E16_08260) - 1657765..1658250 (-) 486 WP_192369008.1 LURP-one-related/scramblase family protein -
  D2E16_RS08020 (D2E16_08265) prsA 1658614..1659615 (-) 1002 WP_192369007.1 peptidylprolyl isomerase PrsA -
  D2E16_RS08025 (D2E16_08270) - 1659678..1660397 (-) 720 WP_044672599.1 O-methyltransferase -
  D2E16_RS08030 (D2E16_08275) - 1660472..1661020 (-) 549 WP_192369006.1 DUF6630 family protein -
  D2E16_RS08035 (D2E16_08280) - 1661031..1661474 (-) 444 WP_029944326.1 hypothetical protein -
  D2E16_RS08040 (D2E16_08285) pepF 1661476..1663278 (-) 1803 WP_192369005.1 oligoendopeptidase F Regulator
  D2E16_RS08045 (D2E16_08290) coiA 1663507..1664448 (-) 942 WP_192369004.1 competence protein CoiA Machinery gene
  D2E16_RS08050 (D2E16_08295) metG 1664509..1666512 (-) 2004 WP_192369003.1 methionine--tRNA ligase -
  D2E16_RS08055 (D2E16_08300) - 1666721..1667470 (-) 750 WP_192369002.1 hypothetical protein -

Sequence

Protein


Download         Length: 600 a.a.        Molecular weight: 69148.30 Da        Isoelectric Point: 4.5778

>NTDB_id=313533 D2E16_RS08040 WP_192369005.1 1661476..1663278(-) (pepF) [Streptococcus suis strain YSJ17]
MSKQRHEIEEKYQWDLTTVFPTDDAWEAELVDLQAETEKTKEFAGHLLDSAKSLLEISETQLGLMRRIEKLYVYASMKND
QDTREGKYQEFQAKAMGLYSVFSQAFAFYEPEFMAITEEQLEAFKAEEPTLVQYSHQFEKLLAAKDHVLSQEVEEVLAAT
SEIFESPAETFSVLDNASLRFPEIADEDGHLAPLSHGNYIHFMESKNRDVRQEAYEAMYGTYEQFQHTYAKTLQSNVKVN
NLKARLRKYDSARHASLAANFIPESVYDTLVAAVNKHLPLLHRYINLRKKLLGIDDLKMYDMYTPLSDFSTKISYEDALK
KCQETLEIFGEDYAAIVKEAFENRWIDVHVNEGKRSGAYSGGAYDTNAFMLLNWQDNLDNMYTLIHETGHSLHSMLTRKT
QPYVYGHYSLFLAEIASTTNENLLTEKLLAEVEDDKERFAILNHYLDGFRGTVFRQTQFAEFEQAIYKADQEGQVLTADF
LNELYGQTNEKYYGLSAEENPEIQFEWARIPHFYYNFYVYQYATGFAAASALANKIVNGSPEDKENYLNYLKAGSSDYSL
NVIAKAGVDMTKEDYLNDAFKVFEARLEELEALVEKGVHL

Nucleotide


Download         Length: 1803 bp        

>NTDB_id=313533 D2E16_RS08040 WP_192369005.1 1661476..1663278(-) (pepF) [Streptococcus suis strain YSJ17]
ATGTCTAAACAACGTCATGAAATTGAAGAAAAATACCAGTGGGACTTGACCACTGTTTTCCCAACCGATGATGCCTGGGA
GGCAGAACTTGTAGATTTACAAGCTGAAACTGAAAAAACAAAAGAATTTGCAGGTCATTTGCTGGACTCAGCTAAAAGTC
TCTTAGAAATTAGCGAAACGCAACTCGGTCTCATGCGTCGCATTGAAAAACTCTATGTCTATGCGTCTATGAAGAACGAC
CAAGATACTCGTGAAGGCAAATATCAGGAATTTCAAGCTAAAGCAATGGGCTTGTATTCGGTTTTTTCACAGGCTTTTGC
CTTCTATGAGCCTGAATTTATGGCCATTACTGAAGAGCAGCTGGAGGCCTTTAAGGCAGAAGAGCCTACTCTTGTTCAGT
ACAGCCACCAATTTGAAAAGCTTCTGGCAGCCAAAGACCATGTCTTGTCACAGGAAGTAGAAGAAGTCCTGGCAGCGACC
AGCGAGATTTTTGAATCACCAGCTGAAACCTTCTCTGTCTTGGACAATGCCAGCCTACGTTTCCCAGAAATTGCTGATGA
AGATGGTCACTTGGCGCCTCTTTCTCACGGCAACTACATTCACTTTATGGAGTCTAAAAACCGTGATGTCCGCCAAGAAG
CATACGAGGCTATGTACGGTACCTATGAGCAATTCCAGCATACCTACGCTAAGACTTTGCAGTCTAATGTCAAGGTCAAT
AACCTAAAAGCTCGTTTGCGTAAGTACGATTCAGCCCGTCACGCATCACTTGCGGCTAATTTCATTCCAGAATCTGTTTA
CGATACATTAGTGGCGGCTGTTAACAAGCATCTCCCGCTCTTGCACCGCTATATCAATTTGCGTAAGAAACTTCTGGGGA
TTGATGATCTTAAGATGTACGATATGTATACTCCATTGTCAGATTTCAGTACCAAGATTTCCTATGAAGATGCTCTTAAG
AAATGCCAAGAAACCTTAGAAATATTCGGTGAGGATTATGCGGCTATTGTCAAAGAAGCCTTCGAAAATCGCTGGATTGA
TGTCCATGTTAATGAAGGCAAACGCTCAGGAGCATATTCAGGAGGTGCCTACGACACCAACGCCTTCATGCTTCTCAATT
GGCAGGATAACTTGGATAATATGTACACCCTTATCCATGAAACAGGGCATTCTCTTCACTCTATGTTGACTCGTAAGACT
CAACCCTATGTCTATGGTCATTATTCCCTCTTCTTGGCAGAAATTGCTTCAACAACCAATGAAAATCTTTTGACAGAAAA
ACTCTTGGCAGAAGTAGAAGATGACAAGGAACGCTTTGCGATTCTCAACCATTATCTAGATGGTTTCCGTGGTACAGTCT
TCCGCCAGACCCAATTTGCGGAGTTTGAGCAAGCAATCTATAAGGCAGACCAGGAAGGTCAAGTCTTGACGGCTGATTTC
CTCAATGAATTGTACGGTCAGACAAACGAGAAATATTACGGACTTTCTGCCGAAGAAAATCCAGAAATCCAGTTTGAGTG
GGCTCGTATTCCACACTTCTATTACAATTTCTATGTCTATCAGTATGCGACAGGTTTTGCGGCAGCATCAGCTCTAGCAA
ACAAGATTGTCAATGGTAGCCCAGAAGACAAAGAAAACTATCTCAACTACTTGAAAGCAGGTAGCTCAGATTACTCCCTC
AATGTCATCGCTAAGGCTGGCGTAGACATGACCAAGGAAGATTACCTCAACGATGCCTTCAAGGTATTTGAAGCTCGTTT
AGAAGAATTAGAAGCTCTTGTTGAGAAAGGTGTGCACCTCTAA

Domains

Predicted by InterproScan.

Peptidase family M3 (Peptidase_M3)

(202-581)

Oligopeptidase F (Peptidase_M3_N)

(112-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

69.333

100

0.693

Multiple sequence alignment