Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D1345_RS19130 Genome accession   NZ_CP031968
Coordinates   4183218..4184726 (-) Length   502 a.a.
NCBI ID   WP_019103587.1    Uniprot ID   -
Organism   Chromobacterium rhizoryzae strain JP2-74     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4178218..4189726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1345_RS19100 (D1345_19100) - 4178270..4179166 (+) 897 WP_081575323.1 hypothetical protein -
  D1345_RS19105 (D1345_19105) purB 4179232..4180602 (+) 1371 WP_043591371.1 adenylosuccinate lyase -
  D1345_RS19115 (D1345_19115) - 4180875..4181696 (-) 822 WP_118268329.1 undecaprenyl-diphosphate phosphatase -
  D1345_RS19120 (D1345_19120) - 4181780..4182391 (-) 612 WP_039756185.1 thiol:disulfide interchange protein DsbA/DsbL -
  D1345_RS19125 (D1345_19125) - 4182418..4183068 (-) 651 WP_019103586.1 SPOR domain-containing protein -
  D1345_RS19130 (D1345_19130) comM 4183218..4184726 (-) 1509 WP_019103587.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D1345_RS19135 (D1345_19135) - 4184732..4185019 (-) 288 WP_019103588.1 accessory factor UbiK family protein -
  D1345_RS19140 (D1345_19140) glnK 4185332..4185670 (+) 339 WP_019103589.1 P-II family nitrogen regulator -
  D1345_RS19145 (D1345_19145) - 4185700..4187013 (+) 1314 WP_019103590.1 ammonium transporter -
  D1345_RS19155 (D1345_19155) - 4188274..4188717 (-) 444 WP_019103450.1 ClpXP protease specificity-enhancing factor -
  D1345_RS19160 (D1345_19160) - 4188727..4189329 (-) 603 WP_039756141.1 glutathione S-transferase N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53473.62 Da        Isoelectric Point: 6.9583

>NTDB_id=312969 D1345_RS19130 WP_019103587.1 4183218..4184726(-) (comM) [Chromobacterium rhizoryzae strain JP2-74]
MALAVVASRALAGVDAPEVAVEVHLANGLPAFTIVGLPDLEVRESRERVRAAILTSGFEFPARRITVNLAPADLPKDSGR
FDLPIAIGILVASGQVRCPKLAEYEIAGELALTGALRPVRGALAMACKTREAGRAFILPVASAREAAVLEGMPLYGVSTL
VEACAFLNGLSELEPYRQEGGSSRSLPDYLDLLDIKGQSMARHALEVAAAGRHSLLLIGPPGTGKSMLAARLPGILPGMP
DEEALESAAVRSLGTDGFALDDWGVRPFRSPHHTASAVALVGGGSDPRPGEISLAHHGVLFLDELPEFDRKVLEVLREPL
EAGVIHISRAARQASFPARFQLIAAMNPCPCGYLGHFSGKCRCTPEQVGRYRGKISGPLLDRIDLHVEVQSLPADELVDG
AAGEPSALVRERVESAYRRQLARQGKANAGLSGAELEALGDFHAEGLALLRQVLDKIGLSARSYHRILRVSRTIADLQGQ
AMVMREHVLQAIQLRRAAMPNG

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=312969 D1345_RS19130 WP_019103587.1 4183218..4184726(-) (comM) [Chromobacterium rhizoryzae strain JP2-74]
ATGGCGCTGGCTGTGGTCGCAAGTCGGGCGCTGGCCGGAGTGGACGCGCCTGAGGTTGCGGTGGAAGTGCATTTGGCCAA
CGGCTTGCCCGCTTTCACCATTGTCGGCTTGCCTGATCTGGAGGTGAGGGAAAGCCGGGAGCGAGTCCGCGCGGCAATCT
TGACCTCTGGTTTTGAGTTCCCGGCCCGGCGCATCACCGTCAACCTGGCCCCGGCCGATCTTCCCAAAGACTCCGGCCGT
TTTGACCTGCCCATCGCCATTGGCATTCTTGTTGCCAGCGGACAGGTACGCTGTCCCAAATTGGCGGAATATGAAATCGC
GGGAGAGTTGGCGTTGACCGGGGCCCTGCGGCCGGTGCGCGGGGCCTTGGCGATGGCGTGCAAAACGAGGGAGGCGGGGC
GCGCCTTCATCTTGCCGGTAGCCAGCGCCAGGGAGGCCGCTGTGCTTGAGGGCATGCCTTTGTATGGCGTGAGCACCCTG
GTTGAGGCCTGCGCCTTTCTCAACGGTCTCTCCGAGCTGGAGCCGTACCGACAAGAGGGCGGTTCGTCCCGCTCGCTTCC
GGATTACCTTGATCTATTGGATATCAAAGGCCAGTCCATGGCGCGCCATGCGCTGGAAGTAGCCGCGGCAGGGCGGCATA
GCCTCTTGTTGATCGGCCCGCCCGGCACCGGCAAATCCATGTTGGCCGCCCGCCTGCCCGGTATCTTGCCCGGCATGCCG
GATGAAGAGGCGCTGGAAAGCGCCGCCGTGCGTTCTTTGGGGACCGATGGCTTTGCCCTGGACGATTGGGGCGTACGGCC
GTTCCGTTCTCCGCACCATACCGCGTCCGCGGTTGCGCTGGTGGGCGGTGGCAGCGATCCCCGGCCTGGAGAAATTAGCC
TGGCGCATCATGGGGTCTTGTTTTTGGACGAATTGCCGGAGTTCGATCGTAAAGTGCTGGAGGTCTTGCGCGAGCCGCTG
GAGGCCGGAGTAATCCACATTTCGCGCGCCGCGCGCCAAGCCAGTTTTCCCGCGCGATTTCAGCTGATTGCGGCAATGAA
TCCCTGCCCGTGTGGCTATCTTGGGCATTTCAGCGGAAAATGCCGGTGCACGCCCGAGCAAGTGGGGCGCTATCGAGGTA
AAATATCCGGTCCCTTATTGGACCGCATCGATTTGCATGTTGAAGTGCAGTCCTTGCCTGCCGACGAGTTGGTGGATGGG
GCCGCCGGCGAGCCCAGCGCTTTGGTGCGTGAACGGGTGGAGTCGGCGTATCGTCGACAATTGGCGAGGCAGGGAAAGGC
GAATGCCGGCTTGAGCGGGGCCGAACTTGAAGCGCTTGGCGATTTTCACGCCGAAGGGCTGGCATTATTGCGGCAAGTTT
TGGACAAGATCGGCTTGTCGGCGCGGAGTTATCATCGGATACTTCGGGTTTCCAGAACCATTGCCGATTTGCAGGGTCAG
GCTATGGTCATGCGGGAGCATGTGTTGCAGGCGATTCAATTACGACGAGCTGCAATGCCTAATGGCTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-396)

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

51.911

99.004

0.514
  comM Haemophilus influenzae Rd KW20

51.4

99.602

0.512
  comM Glaesserella parasuis strain SC1401

51.098

99.801

0.51
  comM Vibrio cholerae strain A1552

51.613

98.805

0.51
  comM Legionella pneumophila str. Paris

48.126

100

0.486
  comM Legionella pneumophila strain ERS1305867

48.126

100

0.486
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.527

100

0.456

Multiple sequence alignment