Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D1814_RS07905 Genome accession   NZ_CP031967
Coordinates   1811587..1813101 (-) Length   504 a.a.
NCBI ID   WP_118491143.1    Uniprot ID   A0A3A9ULI4
Organism   Alteromonas sp. BL110     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1806587..1818101
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1814_RS07890 (D1814_07890) - 1807658..1808908 (+) 1251 WP_183037589.1 multidrug effflux MFS transporter -
  D1814_RS07895 (D1814_07895) ilvC 1809059..1810537 (-) 1479 WP_118491138.1 ketol-acid reductoisomerase -
  D1814_RS07900 (D1814_07900) ilvY 1810695..1811567 (+) 873 WP_118491140.1 HTH-type transcriptional activator IlvY -
  D1814_RS07905 (D1814_07905) comM 1811587..1813101 (-) 1515 WP_118491143.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D1814_RS07910 (D1814_07910) - 1813305..1813922 (-) 618 WP_118491145.1 trimeric intracellular cation channel family protein -
  D1814_RS07915 (D1814_07915) ilvD 1814351..1816201 (+) 1851 WP_118491147.1 dihydroxy-acid dehydratase -
  D1814_RS07920 (D1814_07920) ilvA 1816201..1817748 (+) 1548 WP_118491149.1 threonine ammonia-lyase, biosynthetic -

Sequence

Protein


Download         Length: 504 a.a.        Molecular weight: 54128.71 Da        Isoelectric Point: 6.2370

>NTDB_id=312940 D1814_RS07905 WP_118491143.1 1811587..1813101(-) (comM) [Alteromonas sp. BL110]
MGMAVVKTFAGQGVSAPEVSVEIHLANGLPAFQLVGMAETSVKEARERVRSALINSGFEFPAKRITVNLAPADIPKFGGR
FDLPIAVGILAASGYISDISLLNIAFVGELALNGEIKPVNGLIPVVMTAANEDIALVYPGDNDVEAALVSHATRFPAFDL
LSVYEHLTGNKKLAKGQPFTSHSSRSSTSGWDDIIGQEQAKRALIIAASGAHNLLMVGPPGTGKSLLASRMLSLLPDMSE
EEALEVAAIHSVKGEKLNAERFLTRHLRSPHHTSSAVALTGGGSNPVPGEISLAHNGILFLDELPEFGRKALDVLREPLE
TGDVHLSRASGSATYPANFQLVAAMNPSPTGDIDDNRLTPQQQLNYLNRLSGPLLDRIDIQVEVPRLPDYDLPERGNRPD
DSLHDMRERVIAARQKQESRQGKPNGALHAGELADICLLDNADLLFLQAAAKQLNLSMRVFHRTLKVARTIADLEKESAV
SRAHIAEALGYRALDNLIKQLSAS

Nucleotide


Download         Length: 1515 bp        

>NTDB_id=312940 D1814_RS07905 WP_118491143.1 1811587..1813101(-) (comM) [Alteromonas sp. BL110]
ATGGGAATGGCTGTTGTTAAAACCTTTGCAGGGCAGGGCGTGTCTGCTCCAGAGGTAAGTGTGGAGATTCACTTGGCTAA
TGGCCTACCTGCCTTTCAACTGGTCGGTATGGCGGAAACCAGTGTGAAAGAAGCCCGTGAGCGGGTACGCAGCGCGCTAA
TTAACAGTGGTTTCGAGTTTCCTGCCAAACGAATAACGGTTAATTTAGCGCCGGCTGATATCCCAAAGTTTGGCGGCCGG
TTCGACCTTCCTATTGCCGTTGGCATTTTAGCAGCTTCGGGGTACATTTCAGATATTAGCCTGCTTAATATTGCCTTTGT
GGGCGAGTTAGCGCTAAACGGTGAGATTAAACCGGTTAACGGGCTTATTCCTGTAGTGATGACGGCAGCGAACGAAGATA
TAGCCCTTGTTTATCCGGGAGATAACGATGTTGAAGCTGCCTTGGTTTCCCACGCCACACGCTTTCCCGCATTTGATCTC
CTCTCTGTTTATGAACACCTTACTGGGAACAAAAAACTCGCTAAAGGGCAGCCTTTCACTTCTCACTCATCACGCAGCTC
GACATCTGGTTGGGATGATATTATTGGGCAAGAGCAGGCAAAACGGGCTTTAATAATTGCAGCTAGCGGGGCTCACAACT
TATTGATGGTAGGCCCGCCAGGCACAGGTAAAAGCTTGCTTGCCAGTCGAATGTTGTCGCTATTACCGGATATGAGTGAA
GAAGAAGCCTTGGAAGTCGCTGCTATTCACTCAGTGAAAGGCGAAAAGCTAAATGCTGAACGTTTTCTAACCCGCCACCT
GCGTTCGCCCCACCATACCAGTTCAGCTGTAGCGCTTACTGGCGGCGGGTCTAACCCTGTGCCAGGGGAAATTTCGCTGG
CCCACAACGGTATTTTGTTTTTAGACGAACTCCCCGAATTTGGCCGAAAAGCGCTTGATGTATTACGCGAACCACTTGAA
ACTGGCGACGTTCATTTATCCCGTGCATCAGGAAGTGCAACCTACCCAGCCAACTTTCAGCTGGTCGCGGCAATGAATCC
TAGCCCCACAGGGGATATTGATGACAATCGGCTTACACCACAGCAACAGCTGAACTACTTAAACCGTTTATCAGGTCCAT
TGCTCGATAGAATAGACATTCAAGTAGAAGTGCCTCGCTTACCCGACTACGACTTGCCAGAGCGGGGCAATAGACCTGAC
GACTCGTTACATGACATGCGGGAAAGGGTGATAGCTGCACGGCAAAAACAAGAGTCTCGACAAGGCAAACCCAATGGCGC
TTTACACGCGGGTGAGCTTGCCGACATCTGTTTGCTAGATAACGCAGATCTCCTATTTTTACAGGCAGCCGCAAAACAAC
TTAATTTATCTATGCGTGTATTTCACCGCACGCTAAAAGTGGCTAGAACCATTGCCGACCTTGAAAAGGAAAGCGCCGTT
TCCAGGGCTCATATCGCAGAAGCGCTGGGCTATCGAGCTCTCGATAACCTTATAAAGCAGCTCAGTGCTAGCTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-136)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-492)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(192-388)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A3A9ULI4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

54.653

100

0.548
  comM Vibrio campbellii strain DS40M4

53.465

100

0.536
  comM Haemophilus influenzae Rd KW20

51.575

100

0.52
  comM Glaesserella parasuis strain SC1401

50.988

100

0.512
  comM Legionella pneumophila str. Paris

45.565

98.413

0.448
  comM Legionella pneumophila strain ERS1305867

45.565

98.413

0.448
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.195

100

0.435

Multiple sequence alignment