Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D1819_RS12555 Genome accession   NZ_CP031961
Coordinates   2792410..2793927 (-) Length   505 a.a.
NCBI ID   WP_009840563.1    Uniprot ID   A4CEQ4
Organism   Pseudoalteromonas tunicata strain D2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2787410..2798927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1819_RS12545 (D1819_12545) - 2789879..2790583 (+) 705 WP_009840561.1 response regulator transcription factor -
  D1819_RS12550 (D1819_12550) - 2790613..2792325 (-) 1713 WP_040644336.1 tetratricopeptide repeat protein -
  D1819_RS12555 (D1819_12555) comM 2792410..2793927 (-) 1518 WP_009840563.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D1819_RS12560 (D1819_12560) - 2794096..2794545 (-) 450 WP_009840564.1 hypothetical protein -
  D1819_RS12565 (D1819_12565) - 2794562..2795932 (-) 1371 WP_009840565.1 esterase/lipase family protein -
  D1819_RS12570 (D1819_12570) - 2796542..2797156 (-) 615 WP_009840566.1 trimeric intracellular cation channel family protein -
  D1819_RS12575 (D1819_12575) - 2797282..2798280 (-) 999 WP_009840567.1 hypothetical protein -

Sequence

Protein


Download         Length: 505 a.a.        Molecular weight: 55195.17 Da        Isoelectric Point: 7.2963

>NTDB_id=312894 D1819_RS12555 WP_009840563.1 2792410..2793927(-) (comM) [Pseudoalteromonas tunicata strain D2]
MSLARIYSRAQVGIQAPQVIVEVHLGNGLPSFNIVGLPETSVKEAKDRVRSALINSQFAFPDQRITVNLAPADLPKEGGR
FDLAIAIGILIASEQLTCADIGHYEFYGELALSGEIRTVSAIIPSVMAATAAHRCCVLPSENDPLASLIEGSNRKSCTSL
QQVWLDLSGQIPLAFNQGYQANDPHNEIESILDLNEVKGQQQGKRALEIAAAGQHNLLFLGPPGTGKSMLAQRMTGIMPQ
MSTTEALETAAVYSITGQQIELANWRKRPYRNPHHTCSAVALVGGSSNPRPGEISLAHNGILFLDELPEFERKVLDSLRE
PMETGKVVISRAARQAEFPANFQLIAALNPSPTGCHTDKRSTPDQVLKYLSKISGPFLDRIDLQVELPRLPAAQLQSVEH
AESSAQVKGRVIAAYEIQINRQGKANGLLSNKEIARHCFLAEQELQFLAQVSEKLGLSPRSYHRIIKVARTIADLAAEPQ
IRLAHLKEAIGYRALERLLNQLSQY

Nucleotide


Download         Length: 1518 bp        

>NTDB_id=312894 D1819_RS12555 WP_009840563.1 2792410..2793927(-) (comM) [Pseudoalteromonas tunicata strain D2]
ATGTCTTTAGCTCGTATTTATTCTCGTGCCCAAGTTGGCATTCAAGCTCCGCAAGTAATTGTTGAGGTTCATTTAGGAAA
TGGCTTACCTTCATTTAATATCGTTGGCTTACCTGAAACATCGGTTAAAGAAGCGAAAGATAGGGTACGAAGCGCTCTAA
TTAATTCTCAATTTGCATTTCCAGATCAACGAATTACAGTCAATCTTGCTCCTGCCGATTTACCTAAAGAAGGTGGGCGA
TTTGATTTAGCGATTGCCATTGGTATTTTGATTGCGTCTGAGCAACTCACTTGTGCTGATATTGGTCATTATGAGTTTTA
TGGTGAGCTCGCACTCAGCGGTGAAATCCGCACTGTATCGGCTATTATTCCAAGCGTTATGGCTGCCACTGCGGCACATC
GTTGTTGTGTCTTACCAAGTGAAAATGATCCACTTGCCAGTTTAATTGAAGGTTCAAATCGTAAATCTTGCACGAGTTTG
CAGCAAGTTTGGCTTGATTTAAGTGGCCAAATTCCACTTGCCTTTAATCAAGGTTATCAGGCTAATGATCCTCACAATGA
GATTGAATCGATACTTGACCTTAATGAGGTCAAAGGACAGCAGCAAGGCAAACGCGCGTTAGAAATTGCCGCTGCTGGTC
AACATAATTTATTGTTTTTAGGACCACCAGGAACCGGCAAGTCGATGTTGGCACAGCGTATGACAGGTATAATGCCGCAG
ATGAGTACCACTGAAGCACTTGAAACCGCAGCAGTTTATTCCATTACTGGCCAGCAAATTGAATTAGCAAATTGGCGCAA
GCGACCTTACCGAAATCCTCATCATACGTGTTCAGCGGTAGCGCTGGTGGGTGGTTCATCGAATCCTCGGCCAGGTGAAA
TTAGCTTGGCACATAATGGGATTTTGTTTTTAGATGAGCTGCCGGAATTTGAGCGTAAGGTACTTGATAGTCTGCGAGAG
CCGATGGAAACAGGTAAAGTGGTGATCTCTCGAGCAGCTCGTCAAGCTGAGTTTCCTGCTAATTTTCAGCTTATTGCGGC
ACTTAATCCCAGTCCAACAGGTTGTCACACCGATAAGCGTTCAACTCCTGACCAAGTATTAAAGTATCTAAGTAAAATAT
CTGGCCCGTTTTTAGATCGAATCGATTTACAGGTTGAATTACCGAGGTTACCGGCGGCACAACTTCAAAGTGTTGAACAT
GCAGAGTCTAGCGCGCAAGTTAAAGGGCGAGTTATTGCAGCCTATGAAATACAAATAAACCGCCAAGGAAAAGCTAATGG
GCTATTGAGTAATAAGGAAATCGCTAGACATTGTTTTTTAGCTGAGCAGGAATTACAATTTTTAGCTCAAGTGAGCGAAA
AGCTAGGGTTATCACCTCGTTCATATCATCGAATTATCAAAGTTGCTCGTACCATTGCCGATTTAGCTGCAGAGCCTCAA
ATCCGATTAGCTCATTTAAAAGAAGCAATTGGTTATCGTGCTTTAGAAAGGTTGTTAAACCAGTTATCTCAGTATTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(193-394)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A4CEQ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.312

100

0.574
  comM Vibrio campbellii strain DS40M4

56.324

100

0.564
  comM Haemophilus influenzae Rd KW20

55.315

100

0.556
  comM Glaesserella parasuis strain SC1401

54.331

100

0.547
  comM Legionella pneumophila str. Paris

48.911

100

0.489
  comM Legionella pneumophila strain ERS1305867

48.911

100

0.489
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.386

100

0.414

Multiple sequence alignment