Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D1100_RS04845 | Genome accession | NZ_CP031869 |
| Coordinates | 1052403..1052849 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain WF83 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1047403..1057849
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1100_RS04820 (D1100_04835) | yacG | 1048310..1048498 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| D1100_RS04825 (D1100_04840) | coaE | 1048480..1049118 (-) | 639 | WP_005617375.1 | dephospho-CoA kinase | - |
| D1100_RS04830 (D1100_04845) | - | 1049140..1049778 (-) | 639 | WP_012478451.1 | prepilin peptidase | - |
| D1100_RS04835 (D1100_04850) | pilC | 1049805..1051007 (-) | 1203 | WP_005617379.1 | type II secretion system F family protein | Machinery gene |
| D1100_RS04840 (D1100_04855) | pilB | 1050991..1052385 (-) | 1395 | WP_005601209.1 | GspE/PulE family protein | Machinery gene |
| D1100_RS04845 (D1100_04860) | pilA | 1052403..1052849 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D1100_RS04850 (D1100_04865) | radA | 1053031..1054410 (+) | 1380 | WP_017357656.1 | DNA repair protein RadA | - |
| D1100_RS04855 (D1100_04870) | - | 1054454..1054687 (-) | 234 | WP_005615190.1 | YgjV family protein | - |
| D1100_RS04860 (D1100_04875) | folA | 1054814..1055302 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| D1100_RS04865 (D1100_04880) | proB | 1055389..1056480 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| D1100_RS04870 (D1100_04885) | - | 1056493..1057269 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=312208 D1100_RS04845 WP_005597397.1 1052403..1052849(-) (pilA) [Actinobacillus pleuropneumoniae strain WF83]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=312208 D1100_RS04845 WP_005597397.1 1052403..1052849(-) (pilA) [Actinobacillus pleuropneumoniae strain WF83]
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAATTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |