Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D1103_RS04700 | Genome accession | NZ_CP031864 |
| Coordinates | 1039780..1040226 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae serovar 10 str. D13039 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1034780..1045226
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1103_RS04675 (D1103_04725) | yacG | 1035687..1035875 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| D1103_RS04680 (D1103_04730) | coaE | 1035857..1036495 (-) | 639 | WP_005612207.1 | dephospho-CoA kinase | - |
| D1103_RS04685 (D1103_04735) | - | 1036517..1037155 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| D1103_RS04690 (D1103_04740) | pilC | 1037182..1038384 (-) | 1203 | WP_005612209.1 | type II secretion system F family protein | Machinery gene |
| D1103_RS04695 (D1103_04745) | pilB | 1038368..1039762 (-) | 1395 | WP_237610862.1 | GspE/PulE family protein | Machinery gene |
| D1103_RS04700 (D1103_04750) | pilA | 1039780..1040226 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D1103_RS04705 (D1103_04755) | radA | 1040408..1041787 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| D1103_RS04710 (D1103_04760) | - | 1041831..1042064 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| D1103_RS04715 (D1103_04765) | folA | 1042191..1042679 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| D1103_RS04720 (D1103_04770) | proB | 1042766..1043857 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| D1103_RS04725 (D1103_04775) | - | 1043870..1044646 (+) | 777 | WP_005612213.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=312128 D1103_RS04700 WP_005597397.1 1039780..1040226(-) (pilA) [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=312128 D1103_RS04700 WP_005597397.1 1039780..1040226(-) (pilA) [Actinobacillus pleuropneumoniae serovar 10 str. D13039]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |