Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | D1110_RS04680 | Genome accession | NZ_CP031856 |
| Coordinates | 1021259..1021705 (-) | Length | 148 a.a. |
| NCBI ID | WP_005597397.1 | Uniprot ID | B0BPG5 |
| Organism | Actinobacillus pleuropneumoniae strain 16287-1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 1016259..1026705
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D1110_RS04655 (D1110_04655) | yacG | 1017166..1017354 (-) | 189 | WP_005597388.1 | DNA gyrase inhibitor YacG | - |
| D1110_RS04660 (D1110_04660) | coaE | 1017336..1017974 (-) | 639 | WP_005601202.1 | dephospho-CoA kinase | - |
| D1110_RS04665 (D1110_04665) | - | 1017996..1018634 (-) | 639 | WP_005604550.1 | prepilin peptidase | - |
| D1110_RS04670 (D1110_04670) | pilC | 1018661..1019863 (-) | 1203 | WP_237586308.1 | type II secretion system F family protein | Machinery gene |
| D1110_RS04675 (D1110_04675) | pilB | 1019847..1021241 (-) | 1395 | WP_237586309.1 | GspE/PulE family protein | Machinery gene |
| D1110_RS04680 (D1110_04680) | pilA | 1021259..1021705 (-) | 447 | WP_005597397.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | Machinery gene |
| D1110_RS04685 (D1110_04685) | radA | 1021887..1023266 (+) | 1380 | WP_005601211.1 | DNA repair protein RadA | Machinery gene |
| D1110_RS04690 (D1110_04690) | - | 1023310..1023543 (-) | 234 | WP_005597399.1 | YgjV family protein | - |
| D1110_RS04695 (D1110_04695) | folA | 1023670..1024158 (-) | 489 | WP_005597400.1 | type 3 dihydrofolate reductase | - |
| D1110_RS04700 (D1110_04700) | proB | 1024245..1025336 (+) | 1092 | WP_005601213.1 | glutamate 5-kinase | - |
| D1110_RS04705 (D1110_04705) | - | 1025349..1026125 (+) | 777 | WP_005597402.1 | TSUP family transporter | - |
Sequence
Protein
Download Length: 148 a.a. Molecular weight: 15980.38 Da Isoelectric Point: 7.6257
>NTDB_id=311944 D1110_RS04680 WP_005597397.1 1021259..1021705(-) (pilA) [Actinobacillus pleuropneumoniae strain 16287-1]
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
MQKLSLIRPLTNAFTLIELMIVIAIIAILATVAIPSYNSYTQKAALSELLAASASYKTDVEICIYNTGDSKNCSGGQNGV
RKMTELRQAKYLNAITVEGGTITVTGKGNLQEYGYTMTPIHNGSTISWETKCKGEDLSLFPANFCASN
Nucleotide
Download Length: 447 bp
>NTDB_id=311944 D1110_RS04680 WP_005597397.1 1021259..1021705(-) (pilA) [Actinobacillus pleuropneumoniae strain 16287-1]
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
ATGCAAAAACTAAGTCTTATTCGACCGCTTACTAACGCGTTTACTTTAATTGAATTGATGATCGTGATTGCGATTATTGC
CATTTTAGCTACGGTTGCAATTCCGTCATATAACAGTTATACCCAAAAAGCGGCGCTTTCGGAGCTATTGGCGGCATCGG
CTTCTTATAAAACGGATGTCGAGATCTGCATATATAACACCGGAGATTCTAAAAACTGTAGCGGCGGTCAAAACGGTGTC
AGAAAAATGACGGAGCTTAGACAGGCTAAATATTTAAATGCCATTACGGTGGAAGGCGGAACGATTACAGTAACGGGGAA
AGGGAATCTACAGGAATACGGTTATACGATGACACCGATTCATAACGGTAGCACTATTTCTTGGGAAACGAAATGTAAAG
GGGAGGACTTAAGTTTATTTCCGGCAAATTTCTGCGCATCAAATTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
68.919 |
100 |
0.689 |
| pilA | Haemophilus influenzae 86-028NP |
55.102 |
99.324 |
0.547 |
| pilA | Haemophilus influenzae Rd KW20 |
53.061 |
99.324 |
0.527 |