Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D1F64_RS11385 Genome accession   NZ_CP031841
Coordinates   2476764..2477318 (+) Length   184 a.a.
NCBI ID   WP_117412544.1    Uniprot ID   A0A346R241
Organism   Breoghania sp. L-A4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2471764..2482318
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D1F64_RS11375 (D1F64_11375) uvrA 2472217..2475138 (-) 2922 WP_117414558.1 excinuclease ABC subunit UvrA -
  D1F64_RS11380 (D1F64_11380) - 2475772..2476554 (+) 783 WP_117412543.1 SapC family protein -
  D1F64_RS11385 (D1F64_11385) ssb 2476764..2477318 (+) 555 WP_117412544.1 single-stranded DNA-binding protein Machinery gene
  D1F64_RS11390 (D1F64_11390) - 2477684..2478082 (+) 399 WP_117412545.1 DUF2306 domain-containing protein -
  D1F64_RS11395 (D1F64_11395) - 2478093..2479052 (-) 960 WP_117412546.1 cation diffusion facilitator family transporter -
  D1F64_RS11400 (D1F64_11400) - 2479204..2479563 (+) 360 WP_117414559.1 hypothetical protein -
  D1F64_RS11405 (D1F64_11405) - 2479833..2480846 (+) 1014 WP_117412547.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 19629.40 Da        Isoelectric Point: 5.0178

>NTDB_id=311757 D1F64_RS11385 WP_117412544.1 2476764..2477318(+) (ssb) [Breoghania sp. L-A4]
MAGSVNKVILVGNLGADPEIRRTQDGRPIANLSVATSDSWRDKNTGERRERTEWHRVVIFNEGLCKVAEQYLRKGSKVYL
EGQLQTRKWQDQSGQDKYSTEVVLQGFNSTLTMLDGRAQGEGGGDYSSGGRVGQGSQGGGDFGQSAPMNQGGQYGGGQGG
QGGQSAPGGQRSGPVDDMDDEIPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=311757 D1F64_RS11385 WP_117412544.1 2476764..2477318(+) (ssb) [Breoghania sp. L-A4]
ATGGCTGGCAGCGTAAACAAGGTCATTCTGGTCGGCAATCTGGGCGCCGATCCGGAAATCCGCCGCACACAGGATGGCCG
TCCGATCGCCAATCTGAGTGTCGCCACCTCGGACAGCTGGCGCGACAAGAACACCGGTGAGCGCCGCGAGCGCACCGAGT
GGCATCGTGTGGTGATCTTCAACGAGGGCCTGTGCAAGGTCGCCGAGCAGTATCTGCGCAAGGGTTCGAAGGTCTATCTC
GAGGGCCAGCTGCAGACCCGCAAATGGCAGGACCAGAGCGGCCAGGACAAATATTCCACGGAAGTTGTGCTGCAGGGCTT
CAACTCGACGCTGACCATGCTTGACGGGCGCGCCCAGGGTGAGGGCGGCGGTGATTACAGCTCCGGCGGACGGGTCGGCC
AGGGCAGTCAGGGCGGCGGCGACTTCGGCCAGTCCGCGCCGATGAACCAGGGCGGCCAGTATGGCGGCGGTCAGGGCGGC
CAGGGTGGCCAGAGTGCTCCGGGCGGCCAGCGCAGCGGCCCGGTCGACGACATGGACGACGAAATCCCGTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(5-105)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346R241

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

53.514

100

0.538
  ssb Glaesserella parasuis strain SC1401

51.075

100

0.516
  ssb Neisseria meningitidis MC58

39.572

100

0.402
  ssb Neisseria gonorrhoeae MS11

39.572

100

0.402

Multiple sequence alignment