Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CJA_RS16365 Genome accession   NC_010995
Coordinates   4067253..4068755 (+) Length   500 a.a.
NCBI ID   WP_041551675.1    Uniprot ID   -
Organism   Cellvibrio japonicus Ueda107     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4062253..4073755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CJA_RS16335 (CJA_3388) - 4063314..4063556 (-) 243 WP_041551673.1 hypothetical protein -
  CJA_RS16340 (CJA_3389) - 4063605..4063925 (-) 321 WP_012488965.1 hypothetical protein -
  CJA_RS16345 (CJA_3390) - 4064326..4064664 (-) 339 WP_012488966.1 P-II family nitrogen regulator -
  CJA_RS16350 (CJA_3391) - 4064847..4066115 (-) 1269 WP_012488967.1 ammonium transporter -
  CJA_RS16355 (CJA_3392) - 4066147..4066485 (-) 339 WP_012488968.1 P-II family nitrogen regulator -
  CJA_RS16360 (CJA_3393) - 4066894..4067127 (+) 234 WP_012488969.1 accessory factor UbiK family protein -
  CJA_RS16365 (CJA_3394) comM 4067253..4068755 (+) 1503 WP_041551675.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CJA_RS16370 (CJA_3395) - 4068757..4070517 (-) 1761 WP_238526784.1 putative bifunctional diguanylate cyclase/phosphodiesterase -
  CJA_RS16375 (CJA_3396) rep 4070690..4072708 (+) 2019 WP_012488972.1 DNA helicase Rep -
  CJA_RS16380 (CJA_3397) - 4072809..4073222 (-) 414 WP_041552613.1 c-type cytochrome -

Sequence

Protein


Download         Length: 500 a.a.        Molecular weight: 54336.19 Da        Isoelectric Point: 8.9633

>NTDB_id=31132 CJA_RS16365 WP_041551675.1 4067253..4068755(+) (comM) [Cellvibrio japonicus Ueda107]
MSLAIIFSRAKLGINAPQVTVEVHLSNGLPGLSIVGLPETAVKESKDRVRSAILNSHLEFPARRITVNLAPADLPKDGGR
FDLPIALGILAASGQIPREPLANYEFLGELALSGELRSLNAALPAALACGDAKRDLIISTANAQEAALSSITRVFGAENL
LQVCAHLHGREHLFQATPPASPERLAPKLDIRDVKGQWQAKRALEIAASGGHNLLLYGPPGTGKTMLASRLPGILPSLSE
REMLDVAAIYSVAAQQPDHNMHLRPFRAPHHTASAIALVGGGSYPRPGEISLAHGGVLFLDELPEFSRHVLEVLREPLES
GEVRISRARAQASYPARFQLVAAMNPCPCGYQGSDQRPCRCSPDQIRRYRDRISGPLLDRIDMHVLVTALRQGEMHAHAS
GDSSADIRTRVEQTRSRQLARQGKTNSQLSAPELEQVCYLKETDRQLLDQAINKLGLSTRAYHRVLKLARTLADMAGREQ
LTTGDITEALSYRTLDRARA

Nucleotide


Download         Length: 1503 bp        

>NTDB_id=31132 CJA_RS16365 WP_041551675.1 4067253..4068755(+) (comM) [Cellvibrio japonicus Ueda107]
ATGTCGCTCGCTATTATCTTTTCCCGCGCCAAACTCGGGATCAATGCCCCGCAGGTTACCGTAGAAGTCCACCTTTCCAA
TGGTTTGCCAGGCTTGTCCATCGTCGGCCTGCCGGAAACCGCCGTCAAAGAGAGCAAGGACCGTGTGCGCAGCGCCATTC
TTAACAGCCACCTGGAATTCCCGGCGCGCCGCATTACTGTCAACCTGGCCCCTGCCGATTTACCCAAAGACGGCGGACGC
TTCGACTTGCCCATCGCCCTGGGCATATTGGCAGCCTCAGGGCAAATACCGCGTGAGCCCCTGGCCAATTATGAATTTCT
CGGGGAGCTGGCACTGTCCGGTGAATTGCGCTCGCTCAATGCAGCACTGCCTGCTGCACTCGCCTGTGGTGATGCCAAGC
GTGACTTGATAATTAGCACGGCCAATGCGCAGGAAGCGGCCTTGAGCAGCATCACGCGCGTCTTTGGTGCAGAAAATCTC
CTGCAGGTATGTGCCCACTTACATGGGCGCGAGCATTTATTCCAGGCGACACCACCCGCTAGTCCGGAGCGCCTGGCTCC
CAAACTGGATATCCGCGATGTAAAAGGCCAGTGGCAGGCCAAGCGGGCCCTCGAAATCGCGGCCAGCGGCGGCCACAATC
TGTTGCTCTACGGCCCACCGGGGACAGGGAAAACCATGCTGGCCAGCCGCTTGCCCGGCATACTGCCCAGTCTGAGCGAA
CGCGAGATGCTGGATGTTGCCGCTATTTATTCGGTTGCTGCACAACAGCCGGATCACAACATGCACCTTCGTCCTTTTCG
CGCCCCGCATCACACAGCGTCCGCGATTGCCCTGGTCGGGGGAGGCAGCTATCCACGGCCGGGAGAAATATCCCTGGCAC
ACGGCGGTGTTTTATTCCTCGATGAATTGCCCGAATTTTCCCGCCATGTGCTGGAGGTGTTACGCGAGCCACTGGAAAGT
GGCGAGGTGCGAATTTCGCGCGCCAGGGCGCAAGCATCCTATCCGGCGCGCTTTCAATTGGTCGCGGCGATGAACCCTTG
CCCCTGTGGCTACCAGGGCAGTGACCAGCGCCCATGCCGCTGTAGTCCCGACCAGATACGCCGCTATCGCGACCGGATTT
CCGGCCCCCTGTTGGATCGTATTGATATGCATGTCCTGGTCACGGCCTTGCGCCAGGGAGAAATGCACGCCCACGCCAGC
GGTGATTCAAGTGCAGACATCCGCACCCGGGTCGAGCAAACCCGGTCGCGCCAACTGGCGCGCCAGGGCAAAACCAACAG
CCAGCTCAGTGCGCCGGAGCTGGAACAGGTCTGCTACCTGAAAGAGACCGACCGGCAGTTACTGGATCAGGCCATCAACA
AATTGGGGCTTTCCACCCGCGCCTACCACCGTGTACTCAAGCTGGCGCGCACCCTGGCGGATATGGCCGGGCGAGAGCAG
TTGACTACCGGCGATATTACCGAGGCCCTGAGCTATCGGACATTGGACCGGGCACGCGCCTGA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(402-493)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-394)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

57.485

100

0.576
  comM Vibrio campbellii strain DS40M4

56.112

99.8

0.56
  comM Legionella pneumophila strain ERS1305867

55.912

99.8

0.558
  comM Legionella pneumophila str. Paris

55.912

99.8

0.558
  comM Haemophilus influenzae Rd KW20

54.563

100

0.55
  comM Glaesserella parasuis strain SC1401

54.365

100

0.548
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

44.444

100

0.456

Multiple sequence alignment