Detailed information NTG0031115

Bioinformatically predicted

Overview

• Name: pilQ
• Type: Machinery gene
• Locus tag: CJA_RS02045
• Genome accession: NC_010995
• Coordinates: 514183..516357 (+)
• Length: 724 a.a.
• NCBI ID: WP_238526854.1
• Uniprot ID: -
• Organism: Cellvibrio japonicus Ueda107
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
Genomic island	503656..525410	514183..516357	within	0

Gene organization within MGE regions

Location: 503656..525410

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CJA_RS01990 (CJA_0405)	hslV	503656..504180 (-)	525	WP_012486087.1	ATP-dependent protease subunit HslV	-
CJA_RS01995 (CJA_0406)	-	504270..504818 (-)	549	WP_012486088.1	SPOR domain-containing protein	-
CJA_RS02000 (CJA_0407)	-	504878..507073 (-)	2196	WP_012486089.1	primosomal protein N'	-
CJA_RS02005 (CJA_0408)	-	507183..507485 (+)	303	WP_041550922.1	high-potential iron-sulfur protein	-
CJA_RS02010 (CJA_0409)	rpmE	507652..507870 (+)	219	WP_041550924.1	50S ribosomal protein L31	-
CJA_RS02015 (CJA_0410)	-	507875..508765 (+)	891	WP_012486092.1	thermonuclease family protein	-
CJA_RS02020 (CJA_0411)	-	508779..511190 (-)	2412	WP_049765383.1	penicillin-binding protein 1A	-
CJA_RS02025 (CJA_0412)	pilM	511345..512412 (+)	1068	WP_012486094.1	pilus assembly protein PilM	Machinery gene
CJA_RS02030 (CJA_0413)	-	512412..513002 (+)	591	WP_012486095.1	PilN domain-containing protein	-
CJA_RS02035 (CJA_0414)	-	513002..513655 (+)	654	WP_012486096.1	type 4a pilus biogenesis protein PilO	-
CJA_RS02040 (CJA_0415)	-	513652..514176 (+)	525	WP_012486097.1	pilus assembly protein PilP	-
CJA_RS02045 (CJA_0416)	pilQ	514183..516357 (+)	2175	WP_238526854.1	type IV pilus secretin PilQ	Machinery gene
CJA_RS02050 (CJA_0417)	aroK	516358..516882 (+)	525	WP_012486099.1	shikimate kinase AroK	-
CJA_RS02055 (CJA_0418)	aroB	517032..518117 (+)	1086	WP_041550928.1	3-dehydroquinate synthase	-
CJA_RS02060 (CJA_0419)	-	518147..519805 (+)	1659	WP_083766814.1	SPOR domain-containing protein	-
CJA_RS02065 (CJA_0420)	gcvH	519866..520258 (-)	393	WP_012486102.1	glycine cleavage system protein GcvH	-
CJA_RS02070 (CJA_0421)	gcvT	520301..521416 (-)	1116	WP_012486103.1	glycine cleavage system aminomethyltransferase GcvT	-
CJA_RS02075 (CJA_0422)	-	521536..522105 (-)	570	WP_012486104.1	YbhB/YbcL family Raf kinase inhibitor-like protein	-
CJA_RS02080 (CJA_0423)	-	522133..523155 (-)	1023	WP_012486105.1	FHA domain-containing protein	-
CJA_RS02085 (CJA_0424)	-	523152..524558 (-)	1407	WP_012486106.1	S1C family serine protease	-
CJA_RS02090 (CJA_0425)	-	524652..525410 (-)	759	WP_012486107.1	ComF family protein	-

Sequence

Protein

• Length: 724 a.a.
• Molecular weight: 78501.91 Da
• Isoelectric Point: 5.0038

>NTDB_id=31115 CJA_RS02045 WP_238526854.1 514183..516357(+) (pilQ) [Cellvibrio japonicus Ueda107]
MDALFSSGLNMRKIAILIVCFASALANANSINKIDFSQLPGERFEVHIGFDSVPPEPKGYTIERPARIVLDFPDTSSSLK
ERRFPLAVDNGQSALLLASEGRTRLILNLNQLSTYTTRTDGNSFIVEVGAAQVGGAKSNAQHGSGLISNASGGLSAQDSI
KGVRVTNIDFRRGATGEGRVIVSLSNPKVSANMVGTGTGVRLSFKDVWLPPELRRRLDVVDFATPVSLVAAAQDGENSVL
NISASGDFDYLAYQTDNEYVVSIKPLTEREKQEKKKDFEYTGQKLSLDFQDIEVRAVLQIIADFTDLNLVASDTVQGRIT
LRLQNVPWDQALEMVLKNKGLDKRQVGNVLMVAPAAEIAERERQEIATKKQLEELAPLRTEYIRVRYANAKEMFELFRGG
QGAGSGRGGASAGGQGGNQSTGSVLSERGQGIVDERTNSIIITDTADRIEAFRRLVEQIDIPIRQVMIESRIVIANTDFE
RQLGIRWGGAGYHLNNSRLINVAGSQSGLDDEDGTSPANWFTNGGTLNLTENNMVNLPVNNPAGSIAVGVLTDSVFLDME
LSALETSGYAEIVSQPKVITSDKQKAVIKSGKEIAYQETSPSGGTTTGFKEAVLMLEVVPQITPDNRIIMDLFVTKDSVG
EITQQGVPSLDVTRLQTKVLVNNGQTVVLGGVFSLESTKGESKVPVLGDIPYLGRLFKRTVDNQFKTELLIFVTPKLIAD
SLTN

Nucleotide

• Length: 2175 bp

>NTDB_id=31115 CJA_RS02045 WP_238526854.1 514183..516357(+) (pilQ) [Cellvibrio japonicus Ueda107]
ATGGATGCTCTATTCTCATCGGGGTTGAATATGCGAAAAATAGCCATCTTGATAGTCTGTTTTGCATCAGCATTGGCGAA
TGCTAACAGTATAAATAAAATAGATTTCTCTCAGTTGCCCGGTGAGCGATTTGAGGTACATATAGGCTTCGATTCAGTTC
CTCCTGAACCTAAAGGCTATACGATAGAGCGCCCAGCTCGTATTGTGTTGGACTTTCCCGACACAAGCAGCTCTTTGAAA
GAGCGTCGTTTCCCACTGGCAGTTGATAATGGCCAAAGTGCATTATTGTTGGCCAGTGAAGGCCGTACTCGATTAATCTT
AAATTTAAACCAGCTTTCGACATATACAACACGTACTGATGGCAATAGTTTTATTGTTGAGGTCGGAGCTGCTCAAGTGG
GGGGCGCAAAGTCTAATGCTCAGCATGGTAGTGGGCTTATTTCCAATGCTTCTGGAGGCCTATCGGCACAGGACTCTATT
AAGGGCGTAAGAGTCACTAATATCGATTTCCGCAGAGGTGCAACTGGTGAGGGGCGGGTTATTGTTAGCCTGTCTAATCC
TAAAGTAAGTGCAAATATGGTAGGAACTGGTACTGGTGTGCGTTTATCTTTCAAAGATGTATGGTTGCCACCAGAACTGC
GTAGGCGTCTGGATGTTGTAGATTTTGCAACTCCGGTGTCTTTAGTGGCTGCTGCTCAGGATGGCGAAAATTCTGTTTTG
AATATCAGTGCCTCTGGTGATTTTGATTATCTTGCTTATCAAACAGATAATGAGTATGTGGTGAGTATAAAGCCGCTTAC
TGAGCGTGAAAAACAAGAGAAGAAAAAAGATTTTGAATATACCGGTCAGAAGCTTTCTCTTGATTTCCAGGACATAGAAG
TGCGTGCCGTTTTACAAATTATTGCCGATTTTACAGATTTGAACTTGGTGGCAAGTGACACTGTACAGGGACGTATTACA
TTGCGCTTGCAAAATGTTCCTTGGGATCAGGCCTTGGAAATGGTACTTAAAAACAAAGGTTTAGATAAGCGTCAGGTTGG
AAATGTACTGATGGTTGCACCTGCTGCAGAGATTGCTGAACGTGAGCGCCAAGAGATTGCAACTAAAAAGCAACTGGAAG
AATTAGCTCCGTTACGCACCGAATACATTCGTGTTCGCTATGCGAATGCCAAAGAAATGTTTGAGTTGTTTCGCGGTGGC
CAGGGGGCTGGCTCTGGAAGAGGTGGTGCTAGTGCTGGTGGTCAGGGCGGTAATCAATCAACAGGTAGTGTGTTGTCTGA
AAGAGGACAAGGTATAGTTGATGAGCGCACTAACTCAATTATCATCACGGATACTGCAGATCGTATTGAAGCTTTTAGAC
GCTTGGTTGAACAGATAGATATACCAATCCGTCAGGTAATGATTGAGTCCCGTATCGTGATAGCCAATACGGATTTTGAA
CGTCAGTTGGGTATTCGTTGGGGAGGGGCTGGCTACCATCTTAATAATTCACGATTAATTAATGTTGCCGGCTCTCAATC
AGGTTTGGATGATGAGGATGGAACCAGCCCGGCGAATTGGTTTACTAATGGTGGAACTCTGAATCTTACAGAAAATAACA
TGGTAAACCTCCCGGTTAATAATCCTGCTGGATCTATTGCTGTTGGTGTTCTTACTGATAGTGTCTTTTTGGATATGGAA
CTCAGTGCTCTTGAAACATCCGGATATGCTGAGATTGTTTCCCAGCCGAAGGTAATTACTTCTGACAAGCAGAAGGCAGT
AATTAAGTCGGGAAAAGAAATTGCATATCAGGAGACATCGCCAAGCGGTGGTACCACTACTGGTTTTAAAGAGGCTGTTT
TAATGCTGGAGGTAGTGCCACAAATCACGCCTGATAATCGCATTATTATGGATTTATTTGTTACCAAAGACTCTGTAGGG
GAGATTACCCAGCAAGGAGTTCCATCTTTAGATGTAACACGCCTTCAAACCAAGGTTTTGGTGAATAATGGTCAAACTGT
TGTTCTCGGTGGAGTGTTTTCACTTGAGTCAACAAAGGGTGAGAGTAAAGTGCCAGTGCTTGGTGATATTCCTTATCTTG
GTCGACTTTTCAAGAGAACAGTTGATAACCAATTCAAAACCGAACTGTTGATTTTCGTTACCCCCAAACTTATTGCAGAT
TCACTCACCAATTAA

Domains

Predicted by InterproScan.

• Bacterial type II and III secretion system protein (Secretin) (563-718)

• Bacterial type II/III secretion system short domain (Secretin_N) (381-465)

• AMIN domain (AMIN) (53-127)

• Secretin and TonB N terminus short domain (STN) (308-354)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilQ	Pseudomonas aeruginosa PAK	48.619	100	0.486
pilQ	Acinetobacter baumannii strain A118	40.405	100	0.413
pilQ	Acinetobacter baumannii D1279779	40.405	100	0.413
comQ	Acinetobacter baylyi ADP1	39.945	100	0.403