Detailed information
Bioinformatically predicted
Overview
| Name | pilU | Type | Machinery gene |
| Locus tag | D0Y50_RS14840 | Genome accession | NZ_CP031769 |
| Coordinates | 3368389..3369495 (-) | Length | 368 a.a. |
| NCBI ID | WP_232366273.1 | Uniprot ID | - |
| Organism | Salinimonas sediminis strain N102 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 3363389..3374495
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0Y50_RS14810 (D0Y50_14810) | - | 3363533..3364399 (-) | 867 | WP_108567521.1 | mechanosensitive ion channel family protein | - |
| D0Y50_RS19575 | - | 3364842..3365015 (+) | 174 | WP_170145423.1 | hypothetical protein | - |
| D0Y50_RS14815 (D0Y50_14815) | - | 3365133..3365861 (+) | 729 | WP_117317659.1 | 16S rRNA (uracil(1498)-N(3))-methyltransferase | - |
| D0Y50_RS14820 (D0Y50_14820) | gshB | 3366033..3367001 (+) | 969 | WP_117317661.1 | glutathione synthase | - |
| D0Y50_RS14825 (D0Y50_14825) | - | 3366998..3367564 (+) | 567 | WP_117317663.1 | YqgE/AlgH family protein | - |
| D0Y50_RS14830 (D0Y50_14830) | ruvX | 3367557..3367985 (+) | 429 | WP_108567517.1 | Holliday junction resolvase RuvX | - |
| D0Y50_RS14835 (D0Y50_14835) | - | 3368024..3368386 (-) | 363 | WP_108567516.1 | DUF2007 domain-containing protein | - |
| D0Y50_RS14840 (D0Y50_14840) | pilU | 3368389..3369495 (-) | 1107 | WP_232366273.1 | PilT/PilU family type 4a pilus ATPase | Machinery gene |
| D0Y50_RS14845 (D0Y50_14845) | pilT | 3369506..3370543 (-) | 1038 | WP_108567514.1 | type IV pilus twitching motility protein PilT | Machinery gene |
| D0Y50_RS14850 (D0Y50_14850) | - | 3370573..3371262 (+) | 690 | WP_117317667.1 | YggS family pyridoxal phosphate-dependent enzyme | - |
| D0Y50_RS14855 (D0Y50_14855) | proC | 3371305..3372123 (+) | 819 | WP_117317669.1 | pyrroline-5-carboxylate reductase | - |
| D0Y50_RS14860 (D0Y50_14860) | - | 3372145..3372687 (+) | 543 | WP_108567511.1 | YggT family protein | - |
| D0Y50_RS14865 (D0Y50_14865) | - | 3372726..3373160 (+) | 435 | WP_117317671.1 | DUF4426 domain-containing protein | - |
| D0Y50_RS14870 (D0Y50_14870) | - | 3373549..3374184 (-) | 636 | WP_117317673.1 | glutathione S-transferase family protein | - |
Sequence
Protein
Download Length: 368 a.a. Molecular weight: 40614.62 Da Isoelectric Point: 6.0473
>NTDB_id=311073 D0Y50_RS14840 WP_232366273.1 3368389..3369495(-) (pilU) [Salinimonas sediminis strain N102]
MLIDFLRQATDLGASDIFITAGFPVSAKINGELTSLSEDKLSAFQAKELVHSVMEARYIEELTTQKEANFAVGISGLGRF
RCSAFWQRDSVGMVIRRIVTEIPKVDDLGLPAILKDVIMAKRGLILMVGATGTGKSTSLAALIDHRNHNSKGHILTIEDP
IEFIHRHGQCVVTQREVGIDTHSFDEALKSSLRQAPDVILLGEIRSMETMEYAMSFADTGHLCVATLHANNANQAIERIM
HLAPKELHNKLLFDLSLNLRAIVAQQLVPTKQGGRKAAIEVLLNSPFVSELIQNNRIGELKNAMKKSRESGMQTFDMALY
TLYQQGDIELEQALHHADSPNDLRLMVKLDTNEGSDLGSLSNVSIDMD
MLIDFLRQATDLGASDIFITAGFPVSAKINGELTSLSEDKLSAFQAKELVHSVMEARYIEELTTQKEANFAVGISGLGRF
RCSAFWQRDSVGMVIRRIVTEIPKVDDLGLPAILKDVIMAKRGLILMVGATGTGKSTSLAALIDHRNHNSKGHILTIEDP
IEFIHRHGQCVVTQREVGIDTHSFDEALKSSLRQAPDVILLGEIRSMETMEYAMSFADTGHLCVATLHANNANQAIERIM
HLAPKELHNKLLFDLSLNLRAIVAQQLVPTKQGGRKAAIEVLLNSPFVSELIQNNRIGELKNAMKKSRESGMQTFDMALY
TLYQQGDIELEQALHHADSPNDLRLMVKLDTNEGSDLGSLSNVSIDMD
Nucleotide
Download Length: 1107 bp
>NTDB_id=311073 D0Y50_RS14840 WP_232366273.1 3368389..3369495(-) (pilU) [Salinimonas sediminis strain N102]
GTGTTGATTGATTTTTTGCGCCAGGCCACCGACTTGGGCGCGTCAGATATATTTATAACTGCCGGCTTTCCGGTTAGCGC
CAAGATAAATGGCGAATTAACCAGTCTTAGCGAAGACAAACTCTCAGCCTTTCAGGCTAAAGAACTGGTGCACAGTGTGA
TGGAGGCTCGCTATATCGAGGAGCTTACTACCCAAAAAGAAGCTAACTTTGCTGTAGGTATTTCCGGATTGGGGCGGTTT
CGGTGTAGTGCCTTTTGGCAGCGGGACTCAGTGGGCATGGTTATTCGGCGAATTGTAACGGAAATTCCAAAGGTAGATGA
TTTAGGATTACCCGCCATTTTAAAAGATGTCATTATGGCGAAACGCGGGCTTATTCTGATGGTAGGTGCCACTGGCACGG
GTAAGTCAACCTCGCTGGCAGCGCTTATTGATCATCGGAATCATAATTCTAAAGGTCATATCCTGACCATTGAAGATCCT
ATAGAATTTATTCACCGCCACGGCCAGTGTGTGGTTACCCAGCGTGAAGTCGGGATTGATACCCATTCTTTTGACGAGGC
GTTGAAAAGCTCCTTGCGTCAGGCGCCTGATGTGATTTTGCTAGGCGAGATTCGTTCCATGGAAACCATGGAGTATGCTA
TGTCATTTGCCGATACGGGGCACTTGTGTGTGGCCACATTACATGCCAATAACGCCAACCAGGCAATTGAACGGATAATG
CATCTGGCGCCTAAAGAGCTGCACAATAAGCTTTTGTTTGACCTCAGCCTGAACTTGCGGGCAATTGTGGCACAGCAATT
GGTGCCTACCAAGCAAGGGGGCCGTAAGGCGGCTATTGAGGTTTTACTGAATTCGCCGTTTGTCAGCGAACTCATTCAAA
ACAACCGTATTGGCGAATTAAAAAACGCCATGAAGAAAAGCCGGGAATCAGGAATGCAAACTTTTGATATGGCGCTCTAT
ACGCTATATCAGCAAGGCGATATTGAGCTTGAGCAAGCACTGCATCATGCTGATTCGCCCAACGATTTACGGTTGATGGT
GAAACTGGACACCAATGAGGGTTCTGATTTAGGCTCGCTAAGTAATGTGTCAATAGATATGGATTAA
GTGTTGATTGATTTTTTGCGCCAGGCCACCGACTTGGGCGCGTCAGATATATTTATAACTGCCGGCTTTCCGGTTAGCGC
CAAGATAAATGGCGAATTAACCAGTCTTAGCGAAGACAAACTCTCAGCCTTTCAGGCTAAAGAACTGGTGCACAGTGTGA
TGGAGGCTCGCTATATCGAGGAGCTTACTACCCAAAAAGAAGCTAACTTTGCTGTAGGTATTTCCGGATTGGGGCGGTTT
CGGTGTAGTGCCTTTTGGCAGCGGGACTCAGTGGGCATGGTTATTCGGCGAATTGTAACGGAAATTCCAAAGGTAGATGA
TTTAGGATTACCCGCCATTTTAAAAGATGTCATTATGGCGAAACGCGGGCTTATTCTGATGGTAGGTGCCACTGGCACGG
GTAAGTCAACCTCGCTGGCAGCGCTTATTGATCATCGGAATCATAATTCTAAAGGTCATATCCTGACCATTGAAGATCCT
ATAGAATTTATTCACCGCCACGGCCAGTGTGTGGTTACCCAGCGTGAAGTCGGGATTGATACCCATTCTTTTGACGAGGC
GTTGAAAAGCTCCTTGCGTCAGGCGCCTGATGTGATTTTGCTAGGCGAGATTCGTTCCATGGAAACCATGGAGTATGCTA
TGTCATTTGCCGATACGGGGCACTTGTGTGTGGCCACATTACATGCCAATAACGCCAACCAGGCAATTGAACGGATAATG
CATCTGGCGCCTAAAGAGCTGCACAATAAGCTTTTGTTTGACCTCAGCCTGAACTTGCGGGCAATTGTGGCACAGCAATT
GGTGCCTACCAAGCAAGGGGGCCGTAAGGCGGCTATTGAGGTTTTACTGAATTCGCCGTTTGTCAGCGAACTCATTCAAA
ACAACCGTATTGGCGAATTAAAAAACGCCATGAAGAAAAGCCGGGAATCAGGAATGCAAACTTTTGATATGGCGCTCTAT
ACGCTATATCAGCAAGGCGATATTGAGCTTGAGCAAGCACTGCATCATGCTGATTCGCCCAACGATTTACGGTTGATGGT
GAAACTGGACACCAATGAGGGTTCTGATTTAGGCTCGCTAAGTAATGTGTCAATAGATATGGATTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilU | Pseudomonas stutzeri DSM 10701 |
58.496 |
97.554 |
0.571 |
| pilU | Vibrio cholerae strain A1552 |
56.18 |
96.739 |
0.543 |
| pilU | Acinetobacter baylyi ADP1 |
55.807 |
95.924 |
0.535 |
| pilT | Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539 |
40.997 |
98.098 |
0.402 |