Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D0Y50_RS00335 Genome accession   NZ_CP031769
Coordinates   67485..69005 (-) Length   506 a.a.
NCBI ID   WP_117314919.1    Uniprot ID   A0A346NHE2
Organism   Salinimonas sediminis strain N102     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 62485..74005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0Y50_RS00320 (D0Y50_00320) - 63558..64817 (+) 1260 WP_117314915.1 multidrug effflux MFS transporter -
  D0Y50_RS00325 (D0Y50_00325) ilvC 65005..66486 (-) 1482 WP_108567669.1 ketol-acid reductoisomerase -
  D0Y50_RS00330 (D0Y50_00330) ilvY 66640..67503 (+) 864 WP_117314917.1 HTH-type transcriptional activator IlvY -
  D0Y50_RS00335 (D0Y50_00335) comM 67485..69005 (-) 1521 WP_117314919.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D0Y50_RS00340 (D0Y50_00340) - 69079..69699 (-) 621 WP_108567672.1 trimeric intracellular cation channel family protein -
  D0Y50_RS00350 (D0Y50_00350) - 70127..71059 (+) 933 WP_108567674.1 branched-chain amino acid transaminase -
  D0Y50_RS00355 (D0Y50_00355) ilvD 71083..72933 (+) 1851 WP_117314922.1 dihydroxy-acid dehydratase -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 54117.39 Da        Isoelectric Point: 8.4960

>NTDB_id=311062 D0Y50_RS00335 WP_117314919.1 67485..69005(-) (comM) [Salinimonas sediminis strain N102]
MGYAVVSTRAGEGVNAPQVQVEVHLANGLPAFHLVGMAETCVKEARDRVRSALINSGFEFPAKRITVNLAPATIPKQGGR
YDLPIAIGILIACKILPEQQLANTELIGELGLNGTLKAVRGIVPALLAARAANSRVFYPAPNQSEAELIDTLKGFGAPDL
LSVYNHFAGILALKAPSATASAGLFAPGPAPRWDDIIGQSQAKRTLLLAAAAGHNLLFVGPPGTGKSLLANRLLHLLPPL
SVDEALEVAAIHSVKGEPLGLTHLFKRPFRAPHHTCSAVALTGGGSQPLPGEISLAHHGVLFLDELPEFGRRALDVLREP
LETGDICISRAHSQATYPARFQLIAAMNPSPTGDLHDNRSSADQTLRYINRLSGPFLDRIDIQVEVPRLPSYVLTPPEST
GPDSAIEASRLVTLARKAQMARQQKLNSQLHPDELAGVCQLSAADMTFLQQACHTLKLSMRVFHRVLKVARTIADIDNSA
VVTRQHLAEALGYRALDKIITQLSSS

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=311062 D0Y50_RS00335 WP_117314919.1 67485..69005(-) (comM) [Salinimonas sediminis strain N102]
ATGGGGTATGCGGTCGTTTCCACTCGGGCGGGTGAAGGAGTTAATGCACCACAGGTGCAGGTTGAGGTCCATCTAGCCAA
CGGCTTGCCGGCATTTCATTTGGTAGGTATGGCAGAAACCTGTGTGAAAGAAGCTCGCGACAGGGTGCGCAGCGCACTGA
TCAACAGTGGTTTCGAGTTTCCGGCCAAGCGTATCACGGTAAACCTTGCTCCAGCGACCATTCCCAAACAGGGCGGCCGT
TACGACTTACCTATCGCCATTGGTATTTTAATCGCTTGCAAGATATTACCTGAGCAACAACTTGCTAATACCGAGCTAAT
TGGTGAGCTTGGTTTAAACGGTACGTTAAAGGCTGTGCGCGGTATTGTACCGGCATTGTTAGCGGCGCGCGCAGCAAATA
GCAGGGTGTTTTACCCAGCCCCTAACCAAAGTGAAGCTGAACTTATCGATACGCTGAAGGGCTTTGGTGCACCGGATCTG
CTCTCGGTTTACAACCATTTTGCAGGTATTCTGGCTTTAAAAGCGCCCTCGGCAACTGCCAGTGCTGGCCTCTTTGCGCC
TGGCCCCGCGCCACGCTGGGATGATATTATCGGCCAATCGCAAGCAAAACGCACCTTGTTGCTGGCAGCGGCCGCGGGTC
ATAACCTTTTATTTGTTGGACCGCCTGGTACCGGTAAAAGCCTGTTGGCGAACCGTTTGTTGCACTTGCTGCCGCCATTG
TCTGTGGATGAAGCATTAGAGGTCGCTGCCATTCATTCGGTAAAAGGCGAGCCACTGGGGCTTACCCATCTATTTAAGCG
ACCTTTTCGCGCGCCACACCATACTTGCTCTGCCGTGGCCCTGACCGGCGGGGGTAGCCAGCCCTTGCCCGGCGAAATAT
CGCTTGCCCACCATGGTGTACTATTTTTAGATGAGCTACCAGAATTCGGCAGGCGCGCATTAGATGTATTACGCGAGCCG
TTGGAGACCGGTGATATATGTATTAGCCGAGCGCATAGCCAGGCCACCTACCCCGCCCGGTTTCAGCTTATTGCTGCAAT
GAATCCCAGTCCAACGGGTGACTTACACGATAACCGCAGCTCGGCTGATCAAACGCTACGCTACATCAACCGTCTTTCCG
GCCCCTTTTTGGATCGTATTGATATTCAGGTGGAAGTCCCACGCCTGCCAAGCTACGTGCTGACACCGCCTGAGTCCACT
GGGCCCGATTCAGCCATTGAGGCAAGTAGGCTGGTGACCTTAGCGCGCAAAGCTCAAATGGCGCGCCAACAAAAACTGAA
TAGCCAGTTACACCCTGACGAGCTGGCTGGCGTTTGTCAGCTTTCCGCTGCTGATATGACATTTTTACAACAGGCATGCC
ATACCCTGAAGTTATCTATGCGGGTTTTTCATCGGGTTCTAAAAGTGGCCCGCACCATTGCTGATATTGACAACAGCGCA
GTAGTGACCCGGCAGCATCTGGCAGAAGCGCTGGGTTACCGGGCGTTAGATAAAATTATTACTCAGCTAAGTTCCAGCTG
A

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-140)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-390)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(410-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346NHE2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

50.389

100

0.512
  comM Haemophilus influenzae Rd KW20

50.491

100

0.508
  comM Vibrio campbellii strain DS40M4

50.493

100

0.506
  comM Glaesserella parasuis strain SC1401

50.198

100

0.502
  comM Legionella pneumophila str. Paris

47.992

98.419

0.472
  comM Legionella pneumophila strain ERS1305867

47.992

98.419

0.472
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

41.65

98.221

0.409

Multiple sequence alignment