Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC/cflB   Type   Machinery gene
Locus tag   DDV21_RS09085 Genome accession   NZ_CP031733
Coordinates   1899550..1900212 (-) Length   220 a.a.
NCBI ID   WP_116878861.1    Uniprot ID   A0A372KKM4
Organism   Streptococcus chenjunshii strain Z15     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1894550..1905212
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DDV21_RS09080 (DDV21_009080) raiA 1898928..1899476 (-) 549 WP_116878860.1 ribosome-associated translation inhibitor RaiA -
  DDV21_RS09085 (DDV21_009085) comFC/cflB 1899550..1900212 (-) 663 WP_116878861.1 ComF family protein Machinery gene
  DDV21_RS09090 (DDV21_009090) comFA/cflA 1900212..1901510 (-) 1299 WP_116878862.1 DEAD/DEAH box helicase Machinery gene
  DDV21_RS09095 (DDV21_009095) - 1901568..1902194 (+) 627 WP_116878863.1 YigZ family protein -
  DDV21_RS09100 (DDV21_009100) cysK 1902322..1903251 (+) 930 WP_116878864.1 cysteine synthase A -
  DDV21_RS09105 (DDV21_009105) - 1903312..1903674 (-) 363 WP_116878865.1 S1 RNA-binding domain-containing protein -
  DDV21_RS09110 (DDV21_009110) - 1903674..1905074 (-) 1401 WP_116878866.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 220 a.a.        Molecular weight: 25704.88 Da        Isoelectric Point: 9.4098

>NTDB_id=310852 DDV21_RS09085 WP_116878861.1 1899550..1900212(-) (comFC/cflB) [Streptococcus chenjunshii strain Z15]
MFCLLCQNPIENKLTFLSIVLLKNNSQIICSRCRRSFEIISSEHCPSCFKNHCSQKCKDCLYWEEKGITVCHEALFTYNQ
AMKDYFNRYKFQGDYVLRKVFAAAIKAHLRPYRAYSIIPVPLSKERYEKRKFNQVKALLEAADISYIDLLIREGSEQQSS
KSKQERLQVNLGFKLKKYDQYPDKVLLVDDIYTTGATLQSIKALFYENGIKNVKTFSLAR

Nucleotide


Download         Length: 663 bp        

>NTDB_id=310852 DDV21_RS09085 WP_116878861.1 1899550..1900212(-) (comFC/cflB) [Streptococcus chenjunshii strain Z15]
GTGTTTTGTTTACTATGCCAAAATCCAATAGAGAATAAACTGACTTTTTTGTCAATAGTGCTATTAAAGAATAATAGTCA
GATAATCTGCAGCCGCTGCCGCCGGTCTTTTGAAATCATCAGTTCTGAACACTGTCCTTCTTGTTTCAAAAATCATTGTT
CGCAGAAGTGCAAAGACTGTCTGTATTGGGAAGAAAAGGGGATTACCGTATGTCACGAAGCTCTTTTTACTTATAACCAA
GCTATGAAGGACTATTTTAACCGTTATAAATTTCAAGGAGATTATGTTTTAAGGAAGGTTTTCGCCGCGGCTATAAAAGC
ACATCTGCGTCCTTACCGAGCTTACAGTATCATACCAGTTCCTTTAAGCAAAGAGAGATATGAAAAGAGGAAGTTTAATC
AGGTTAAAGCTCTTTTGGAAGCTGCCGATATTTCCTATATAGATCTTCTGATCCGAGAAGGATCAGAGCAGCAGTCCAGC
AAATCAAAACAAGAAAGGCTTCAGGTAAATTTAGGCTTCAAACTCAAAAAATATGACCAATATCCAGATAAAGTTTTACT
TGTAGATGATATCTATACAACTGGCGCAACTTTACAAAGTATTAAAGCCCTCTTTTATGAAAATGGAATTAAAAATGTAA
AAACCTTTTCTCTAGCCCGATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A372KKM4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC/cflB Streptococcus pneumoniae Rx1

50

100

0.5
  comFC/cflB Streptococcus pneumoniae D39

50

100

0.5
  comFC/cflB Streptococcus pneumoniae R6

50

100

0.5
  comFC/cflB Streptococcus pneumoniae TIGR4

50

100

0.5
  comFC/cflB Streptococcus mitis NCTC 12261

48.636

100

0.486
  comFC/cflB Streptococcus mitis SK321

47.273

100

0.473

Multiple sequence alignment