Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D0C16_RS15350 Genome accession   NZ_CP031728
Coordinates   3641257..3642765 (+) Length   502 a.a.
NCBI ID   WP_151033163.1    Uniprot ID   -
Organism   Cellvibrio sp. KY-GH-1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3636257..3647765
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0C16_RS15320 (D0C16_15580) - 3636309..3636632 (+) 324 WP_151033160.1 hypothetical protein -
  D0C16_RS15325 (D0C16_15585) - 3636694..3637032 (-) 339 WP_007639554.1 P-II family nitrogen regulator -
  D0C16_RS15330 (D0C16_15590) - 3637226..3638491 (-) 1266 WP_151033161.1 ammonium transporter -
  D0C16_RS15335 (D0C16_15595) - 3638577..3640118 (-) 1542 WP_225318704.1 ammonium transporter -
  D0C16_RS15340 (D0C16_15600) - 3640187..3640525 (-) 339 WP_151034951.1 P-II family nitrogen regulator -
  D0C16_RS15345 (D0C16_15605) - 3640924..3641148 (+) 225 WP_151033162.1 accessory factor UbiK family protein -
  D0C16_RS15350 (D0C16_15610) comM 3641257..3642765 (+) 1509 WP_151033163.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D0C16_RS15355 (D0C16_15615) - 3642773..3644482 (-) 1710 WP_151033164.1 EAL domain-containing protein -
  D0C16_RS15360 (D0C16_15620) rep 3644706..3646724 (+) 2019 WP_151033165.1 DNA helicase Rep -
  D0C16_RS15365 (D0C16_15625) - 3646798..3647196 (-) 399 WP_191968504.1 cytochrome c5 family protein -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 54561.30 Da        Isoelectric Point: 8.4110

>NTDB_id=310793 D0C16_RS15350 WP_151033163.1 3641257..3642765(+) (comM) [Cellvibrio sp. KY-GH-1]
MSLAIIYSRAKLGINAPLVTVEVHISNGLPGLSIVGLPETAVKESKDRVRSAIINSHLEFPAQRITVNLAPADLPKEGGR
YDLAIALGILAASGQIPAEQLERHEFLGELALSGELRPISAALPAALACGDAGRDLIISTASGGEAAFSSITRVFGAANL
LQVCAHLHQREPLKQAEAAQDQFPSNREILDILDVKGQSHAKRALEIAACGGHNLLFYGPPGTGKTMLASRLPGLLPNLS
EREMLDVAAIYSVASQSKDYQWRQRPFRAPHHTASAIALVGGGTNPKPGEISLAHAGVLFLDELPEFSRTVLEVLREPLE
SGEVRISRARNQACFPARFQLIAAMNPCPCGYHGSDANRCRCTPDQVKRYRNKISGPLLDRIDMHVPVRALRQGELQSKT
LGDNSATVRDRVELARARQLQRQGKANNQLSVPELEQHCDLTSSDKNLLEQAINKLGLSTRAYHRVLKLARTLADMNDRN
HLNTVDITEALSYRTLDRQPGN

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=310793 D0C16_RS15350 WP_151033163.1 3641257..3642765(+) (comM) [Cellvibrio sp. KY-GH-1]
ATGTCTCTCGCTATTATCTATTCCCGCGCCAAGCTGGGAATCAATGCCCCACTGGTTACTGTCGAAGTCCATATTTCAAA
TGGCTTGCCTGGCCTCTCCATTGTCGGCCTGCCCGAAACGGCCGTAAAAGAAAGCAAGGATCGGGTGCGCAGTGCCATTA
TCAACAGCCACCTGGAGTTTCCCGCGCAGCGCATTACTGTCAACCTGGCACCGGCTGACCTGCCCAAAGAAGGGGGGCGT
TATGACCTGGCCATTGCACTGGGAATTCTCGCCGCCTCAGGACAAATTCCTGCAGAGCAACTTGAGCGCCACGAGTTTCT
GGGAGAACTGGCGCTTTCTGGCGAGTTGCGCCCAATTAGTGCAGCATTACCGGCCGCGCTCGCCTGTGGCGACGCGGGGC
GTGACTTGATTATTAGCACAGCGAGTGGTGGCGAAGCGGCGTTTAGCAGTATTACGCGCGTATTTGGTGCAGCCAACCTT
TTGCAAGTGTGCGCTCATCTGCACCAGCGAGAACCGCTGAAACAGGCGGAGGCAGCGCAGGACCAGTTCCCGAGCAATCG
CGAAATCCTCGACATTCTCGATGTCAAAGGTCAGTCACACGCCAAACGCGCGCTGGAAATAGCCGCTTGCGGTGGTCACA
ACCTGTTGTTTTACGGCCCGCCGGGTACCGGGAAAACCATGCTGGCCAGCCGGCTACCTGGTTTACTGCCCAACTTGAGC
GAACGGGAGATGCTGGACGTAGCCGCCATCTACTCCGTGGCCTCGCAATCCAAAGACTATCAGTGGCGTCAAAGACCTTT
TCGCGCCCCGCACCATACGGCCTCTGCTATTGCGCTGGTAGGCGGTGGCACCAACCCCAAACCTGGTGAAATCTCGCTGG
CCCATGCCGGTGTATTATTTCTCGACGAACTGCCCGAGTTCTCACGCACGGTACTGGAAGTATTACGCGAGCCGCTGGAA
AGCGGCGAAGTGCGAATTTCGCGCGCGCGCAATCAGGCTTGTTTTCCCGCCCGCTTTCAGCTGATCGCGGCGATGAACCC
TTGCCCCTGCGGCTACCACGGCAGCGACGCCAATCGCTGCCGCTGCACTCCGGATCAGGTAAAGCGCTACCGCAACAAGA
TTTCAGGGCCACTGTTAGACAGAATCGACATGCATGTACCCGTTCGCGCTTTACGGCAAGGAGAATTGCAAAGCAAAACT
CTGGGGGACAATAGCGCTACTGTGCGCGATCGGGTGGAACTGGCACGCGCACGACAATTGCAACGTCAGGGTAAAGCGAA
CAACCAACTCTCGGTACCCGAGTTGGAACAACATTGCGATTTGACCAGCAGCGATAAAAACTTACTTGAGCAAGCGATCA
ACAAACTCGGATTATCGACGCGCGCCTATCACCGCGTGTTAAAACTGGCGCGCACCCTGGCCGATATGAATGATCGCAAT
CATCTGAACACCGTTGATATTACCGAAGCGCTGAGTTATCGCACTCTCGATCGCCAGCCGGGCAATTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-139)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(191-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(403-494)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

56.175

100

0.562
  comM Glaesserella parasuis strain SC1401

55.07

100

0.552
  comM Legionella pneumophila str. Paris

55.332

99.004

0.548
  comM Legionella pneumophila strain ERS1305867

55.332

99.004

0.548
  comM Vibrio campbellii strain DS40M4

54.365

100

0.546
  comM Haemophilus influenzae Rd KW20

54.076

100

0.542
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.257

100

0.456

Multiple sequence alignment