Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   BEN71_RS17625 Genome accession   NZ_CP031716
Coordinates   3547265..3548755 (+) Length   496 a.a.
NCBI ID   WP_068974995.1    Uniprot ID   -
Organism   Acinetobacter wuhouensis strain WCHA60     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3542265..3553755
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN71_RS17600 (BEN71_17600) ribD 3543064..3544191 (-) 1128 WP_068974999.1 bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD -
  BEN71_RS17605 (BEN71_17605) nrdR 3544253..3544717 (-) 465 WP_068974998.1 transcriptional regulator NrdR -
  BEN71_RS17610 (BEN71_17610) - 3544877..3546271 (-) 1395 WP_068974997.1 ammonium transporter -
  BEN71_RS17615 (BEN71_17615) glnK 3546338..3546676 (-) 339 WP_004725283.1 P-II family nitrogen regulator -
  BEN71_RS17620 (BEN71_17620) - 3546965..3547192 (+) 228 WP_068974996.1 accessory factor UbiK family protein -
  BEN71_RS17625 (BEN71_17625) comM 3547265..3548755 (+) 1491 WP_068974995.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  BEN71_RS17630 (BEN71_17630) - 3548774..3549286 (+) 513 WP_227542629.1 GNAT family N-acetyltransferase -
  BEN71_RS17635 (BEN71_17635) - 3549351..3550118 (-) 768 WP_068974994.1 TorF family putative porin -
  BEN71_RS17645 (BEN71_17645) - 3550595..3551365 (-) 771 WP_068974992.1 TorF family putative porin -
  BEN71_RS17650 (BEN71_17650) - 3551674..3552984 (+) 1311 WP_068975116.1 OprD family outer membrane porin -
  BEN71_RS17655 (BEN71_17655) ppa 3553088..3553624 (-) 537 WP_068974991.1 inorganic diphosphatase -

Sequence

Protein


Download         Length: 496 a.a.        Molecular weight: 54342.34 Da        Isoelectric Point: 7.3815

>NTDB_id=310702 BEN71_RS17625 WP_068974995.1 3547265..3548755(+) (comM) [Acinetobacter wuhouensis strain WCHA60]
MSLAKIYTRGLLGLHAPLIEVEVHVSAGLPSLTIVGLAEAAVRESKDRVRSAIINSGYQFPTKRLTINLAPADLPKDGSR
LDLPIALGILIATGQLPEGVTDDFEFIGELALDGHLRPVTGTLTIAMACQMAKHQLMLPKENADEAAQLPEFQVFAATHL
KQVCDHFLTSQKIDASVSTKTTFDNQYKFDLADVKGQLRPRRALEIAAAGGHSILFKGPPGTGKTLLASRLPSILPALNA
QENLEVASIYSIANSQHQFGQRPFRAPHHTASAIALVGGGSNPKPGEITLAHLGVLFLDELPEFDKKVLEVLRQPLESKE
IVISRASRQITFPANFQLIAAMNPCPCGYAFNQDSRCQCSAESIKRYQGRISGPLLDRIDLHIDVPPLKAQELQDHTPVE
NSATVRERVIQAFDFQIQRQGSLNHSLSPKDLEKFVVLDEASRKMIEMAQQRLNLSARAYHRVLRVARTIADLAQSDDIQ
SAHLTEALSYRNPLQS

Nucleotide


Download         Length: 1491 bp        

>NTDB_id=310702 BEN71_RS17625 WP_068974995.1 3547265..3548755(+) (comM) [Acinetobacter wuhouensis strain WCHA60]
ATGTCTTTAGCCAAAATTTATACCCGAGGACTACTCGGGTTGCATGCGCCACTCATTGAAGTTGAAGTCCATGTTAGTGC
TGGCCTTCCCTCATTAACCATTGTTGGACTTGCAGAAGCTGCTGTTCGTGAAAGTAAGGATCGTGTTCGATCTGCCATCA
TCAATAGCGGTTATCAGTTTCCAACCAAACGCCTGACGATCAACCTTGCACCCGCAGATCTGCCTAAAGATGGTTCACGC
TTAGATCTACCTATTGCACTAGGAATATTGATTGCCACAGGTCAACTGCCTGAAGGGGTGACTGATGATTTTGAATTTAT
TGGTGAATTGGCACTCGATGGTCATTTAAGACCTGTCACAGGAACACTCACCATTGCCATGGCTTGTCAAATGGCAAAAC
ACCAACTGATGTTACCCAAAGAAAATGCAGATGAGGCTGCGCAACTTCCTGAGTTTCAAGTGTTTGCAGCCACACATTTA
AAGCAAGTCTGCGATCACTTTCTCACTAGTCAGAAGATTGATGCATCGGTTTCGACAAAAACCACTTTTGATAATCAGTA
TAAATTTGACTTAGCAGATGTCAAAGGTCAACTGCGTCCTCGACGTGCTTTAGAAATTGCTGCGGCAGGTGGACATTCTA
TTTTATTCAAGGGCCCACCAGGTACTGGCAAGACCTTACTCGCCTCTCGTCTTCCAAGTATTTTGCCTGCACTTAATGCA
CAGGAAAATTTAGAAGTTGCCAGCATTTATTCGATTGCCAATTCGCAACACCAATTTGGACAACGCCCATTCAGAGCACC
TCATCACACTGCATCCGCAATCGCACTGGTCGGTGGTGGCTCAAATCCTAAACCTGGTGAAATTACTTTAGCGCATTTAG
GCGTTTTATTTTTGGACGAATTGCCTGAATTTGACAAAAAAGTTTTAGAGGTTTTAAGACAACCTTTAGAATCCAAAGAA
ATTGTGATTTCTAGAGCCTCACGTCAGATTACCTTTCCTGCTAATTTTCAATTGATTGCTGCGATGAATCCCTGCCCTTG
TGGTTATGCCTTTAATCAAGACAGTCGTTGCCAATGTTCTGCTGAATCCATTAAACGTTATCAAGGGCGAATTTCAGGAC
CGTTGCTTGATCGGATTGATTTACACATTGATGTACCACCACTAAAAGCACAGGAATTACAAGATCATACCCCTGTTGAA
AACTCTGCCACCGTTCGAGAACGGGTGATTCAAGCTTTTGACTTTCAAATTCAACGCCAAGGCAGTTTAAATCACAGCTT
ATCGCCCAAAGATTTAGAAAAATTTGTAGTGCTGGATGAAGCCTCTAGAAAAATGATTGAAATGGCACAACAACGACTTA
ATCTGTCTGCACGTGCTTATCATCGTGTATTAAGAGTTGCCAGAACCATTGCAGATTTAGCACAAAGTGATGACATACAA
AGCGCACATTTAACAGAAGCCTTGTCCTACAGAAACCCGCTACAGTCTTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-392)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

49.6

100

0.5
  comM Vibrio campbellii strain DS40M4

50.101

99.798

0.5
  comM Vibrio cholerae strain A1552

49.697

99.798

0.496
  comM Glaesserella parasuis strain SC1401

49.004

100

0.496
  comM Legionella pneumophila str. Paris

49.2

100

0.496
  comM Legionella pneumophila strain ERS1305867

49.2

100

0.496
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.521

100

0.472

Multiple sequence alignment