Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   D0B54_RS22390 Genome accession   NZ_CP031704
Coordinates   4995666..4997174 (+) Length   502 a.a.
NCBI ID   WP_117294326.1    Uniprot ID   A0A346N6S5
Organism   Solimonas sp. K1W22B-7     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4990666..5002174
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0B54_RS22355 (D0B54_22355) - 4990786..4991160 (-) 375 WP_117294316.1 DUF4124 domain-containing protein -
  D0B54_RS22360 (D0B54_22360) - 4991231..4991482 (+) 252 WP_117294318.1 CDGSH iron-sulfur domain-containing protein -
  D0B54_RS22365 (D0B54_22365) - 4991571..4992863 (-) 1293 WP_117294320.1 ammonium transporter -
  D0B54_RS22370 (D0B54_22370) - 4992928..4993266 (-) 339 WP_104230961.1 P-II family nitrogen regulator -
  D0B54_RS22375 (D0B54_22375) - 4993401..4994909 (-) 1509 WP_117295460.1 ammonium transporter -
  D0B54_RS22380 (D0B54_22380) glnK 4994928..4995266 (-) 339 WP_117294322.1 P-II family nitrogen regulator -
  D0B54_RS22385 (D0B54_22385) - 4995408..4995662 (+) 255 WP_117294324.1 accessory factor UbiK family protein -
  D0B54_RS22390 (D0B54_22390) comM 4995666..4997174 (+) 1509 WP_117294326.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  D0B54_RS22395 (D0B54_22395) - 4997240..4997908 (-) 669 WP_117294328.1 TorF family putative porin -
  D0B54_RS22400 (D0B54_22400) - 4998138..4999226 (-) 1089 WP_117294330.1 outer membrane beta-barrel protein -
  D0B54_RS22405 (D0B54_22405) - 4999456..4999887 (-) 432 WP_240433496.1 cytochrome c5 family protein -
  D0B54_RS22415 (D0B54_22415) - 5000442..5001284 (-) 843 WP_117294334.1 DeoR/GlpR family DNA-binding transcription regulator -

Sequence

Protein


Download         Length: 502 a.a.        Molecular weight: 53077.93 Da        Isoelectric Point: 8.6883

>NTDB_id=310643 D0B54_RS22390 WP_117294326.1 4995666..4997174(+) (comM) [Solimonas sp. K1W22B-7]
MSLATVLSRAQNGLAADPVRVEVHLAPGLPGLSIVGLPEAAVRESKDRVRAAIANCGYQFPNRRITCNLAPADLPKNGGR
FDLAIALGILAASEQIPPQRIENMEVLGELSLSGEIMPVQGTLSAALKASAAGNRLLVPAGNFAEASLANSAEILVSHHL
GALCAALHEGSLAPQRTTAARPAVGGQPDLAEVRGQGQAKRALEIAAVGGHSLLMLGPPGSGKSMLAQRLAPLLPPMTEE
EALEAAAIASIGPGGFDARKWGIRAFRSPHHTASGVALVGGGSSPKPGEITLAHHGVLFLDELPEFDRRVLEVLREPLES
GSITVSRAARQSDFPARFQLVAAMNPCPCGYLGDTSGKCRCTPDQVLRYRGRISGPLLDRIDLQLFVPRVERETLTAATS
PTAETSEQVRVRVTAARQRQLARQGKPNAALGPKELEQHCRPEPAAQTLLEAAMTRLSLSARAYHRVLKVARSIADMDAS
EIIGKAHVAEAVRYREMDRGQA

Nucleotide


Download         Length: 1509 bp        

>NTDB_id=310643 D0B54_RS22390 WP_117294326.1 4995666..4997174(+) (comM) [Solimonas sp. K1W22B-7]
ATGAGCCTTGCGACGGTCCTGAGCCGCGCCCAGAACGGCCTGGCGGCCGATCCGGTGCGGGTGGAAGTGCACCTCGCCCC
GGGCCTGCCGGGCCTGAGCATCGTCGGCCTGCCGGAAGCCGCGGTGCGCGAGTCCAAGGACCGGGTCCGGGCCGCCATCG
CCAACTGCGGCTACCAGTTCCCCAATCGCCGCATCACCTGCAACCTGGCGCCTGCGGACCTGCCCAAGAACGGCGGCCGC
TTCGACCTCGCGATTGCCCTGGGCATTCTTGCCGCCTCCGAGCAGATACCGCCGCAGCGCATTGAAAACATGGAAGTTCT
CGGGGAGCTGTCGCTCTCCGGGGAGATCATGCCGGTGCAGGGCACGCTGTCGGCCGCCCTGAAGGCCTCGGCGGCGGGCA
ACCGCCTGCTGGTGCCGGCGGGCAATTTCGCCGAGGCCAGCCTGGCGAATTCCGCCGAAATCCTGGTATCGCACCATCTT
GGTGCGCTTTGCGCTGCCCTGCATGAGGGCAGCCTCGCGCCACAACGGACCACGGCCGCGCGTCCGGCGGTGGGCGGACA
ACCCGACCTGGCCGAGGTCCGCGGCCAGGGGCAGGCGAAACGCGCGCTGGAGATCGCCGCCGTTGGTGGACATTCGCTGC
TGATGCTGGGGCCGCCGGGCTCCGGCAAGTCGATGCTGGCCCAGCGCCTGGCGCCCCTGCTGCCGCCGATGACTGAGGAG
GAAGCCCTGGAGGCCGCGGCCATCGCCTCGATCGGTCCCGGGGGCTTCGATGCACGGAAATGGGGCATTCGCGCCTTTCG
CAGCCCGCATCACACCGCGTCCGGTGTCGCCCTGGTCGGCGGCGGCAGCAGTCCCAAGCCCGGCGAGATCACCCTGGCGC
ACCATGGCGTGCTGTTCCTGGACGAACTGCCCGAATTCGACCGCCGGGTGCTGGAGGTGCTGCGCGAGCCGTTGGAGAGC
GGCAGCATCACCGTGTCGCGCGCGGCGCGGCAGTCGGACTTCCCCGCCCGCTTCCAGCTGGTGGCGGCGATGAACCCCTG
CCCTTGCGGGTACTTGGGCGATACCAGCGGCAAGTGCCGCTGCACCCCGGACCAGGTGCTGCGCTACCGCGGGCGCATCT
CGGGCCCGCTGCTGGATCGCATCGACCTGCAGCTGTTCGTGCCGCGCGTGGAGCGGGAGACGCTCACGGCCGCCACCTCG
CCGACAGCAGAAACCAGCGAGCAGGTGCGCGTCCGTGTGACCGCCGCGCGCCAGCGCCAGCTGGCGCGCCAGGGCAAGCC
CAATGCCGCGCTGGGGCCGAAGGAACTGGAGCAGCATTGCCGTCCCGAGCCGGCCGCCCAGACCCTGCTGGAGGCGGCCA
TGACCCGGCTGTCGCTGTCGGCGCGGGCCTATCACCGCGTGCTCAAGGTGGCCCGCAGCATCGCCGACATGGATGCCAGC
GAGATCATCGGCAAGGCCCACGTCGCCGAGGCCGTGCGCTACCGCGAAATGGATCGCGGCCAGGCCTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-394)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(404-495)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346N6S5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio cholerae strain A1552

52.2

99.602

0.52
  comM Vibrio campbellii strain DS40M4

52

99.602

0.518
  comM Glaesserella parasuis strain SC1401

51.485

100

0.518
  comM Legionella pneumophila str. Paris

50.4

99.602

0.502
  comM Legionella pneumophila strain ERS1305867

50.4

99.602

0.502
  comM Haemophilus influenzae Rd KW20

48.81

100

0.49
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

45.276

100

0.458

Multiple sequence alignment