Detailed information
Bioinformatically predicted
Overview
| Name | comE | Type | Machinery gene |
| Locus tag | D0T92_RS00060 | Genome accession | NZ_CP031700 |
| Coordinates | 12210..12506 (-) | Length | 98 a.a. |
| NCBI ID | WP_151049076.1 | Uniprot ID | A0A5J6PRL5 |
| Organism | Neisseria zalophi strain ATCC BAA-2455 | ||
| Function | DNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 7210..17506
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| D0T92_RS00030 (D0T92_00030) | kdsC | 7505..8041 (+) | 537 | WP_151049064.1 | 3-deoxy-manno-octulosonate-8-phosphatase KdsC | - |
| D0T92_RS00035 (D0T92_00035) | lptC | 8038..8616 (+) | 579 | WP_151049066.1 | LPS export ABC transporter periplasmic protein LptC | - |
| D0T92_RS00040 (D0T92_00040) | lptA | 8597..9109 (+) | 513 | WP_151049068.1 | lipopolysaccharide transport periplasmic protein LptA | - |
| D0T92_RS00045 (D0T92_00045) | lptB | 9325..10053 (+) | 729 | WP_151049070.1 | LPS export ABC transporter ATP-binding protein | - |
| D0T92_RS00050 (D0T92_00050) | rpoN | 10270..11619 (+) | 1350 | WP_151049072.1 | RNA polymerase factor sigma-54 | - |
| D0T92_RS00055 (D0T92_00055) | hpf | 11757..12077 (+) | 321 | WP_151049074.1 | ribosome hibernation-promoting factor, HPF/YfiA family | - |
| D0T92_RS00060 (D0T92_00060) | comE | 12210..12506 (-) | 297 | WP_151049076.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
Sequence
Protein
Download Length: 98 a.a. Molecular weight: 10135.72 Da Isoelectric Point: 9.8979
>NTDB_id=310533 D0T92_RS00060 WP_151049076.1 12210..12506(-) (comE) [Neisseria zalophi strain ATCC BAA-2455]
MKRYLLGIWAALSVTMAAAAVNINTAGAEELAELPGIGPSKAAAIVAYRDENGAFKSVAELKNVKGIGDGILAKVREEAV
TADNADNANKKAKPALKK
MKRYLLGIWAALSVTMAAAAVNINTAGAEELAELPGIGPSKAAAIVAYRDENGAFKSVAELKNVKGIGDGILAKVREEAV
TADNADNANKKAKPALKK
Nucleotide
Download Length: 297 bp
>NTDB_id=310533 D0T92_RS00060 WP_151049076.1 12210..12506(-) (comE) [Neisseria zalophi strain ATCC BAA-2455]
ATGAAGCGTTATTTGTTGGGCATCTGGGCGGCGCTATCGGTGACGATGGCTGCGGCAGCGGTGAATATCAATACGGCGGG
GGCGGAGGAGTTGGCCGAGCTGCCGGGTATCGGGCCCTCGAAGGCGGCGGCGATTGTGGCCTACCGTGATGAGAATGGTG
CCTTTAAGTCGGTGGCAGAGTTGAAGAATGTGAAGGGGATTGGCGACGGTATTTTAGCGAAGGTACGCGAAGAGGCCGTT
ACCGCCGATAATGCCGACAATGCCAATAAAAAAGCCAAACCCGCTCTGAAAAAGTAA
ATGAAGCGTTATTTGTTGGGCATCTGGGCGGCGCTATCGGTGACGATGGCTGCGGCAGCGGTGAATATCAATACGGCGGG
GGCGGAGGAGTTGGCCGAGCTGCCGGGTATCGGGCCCTCGAAGGCGGCGGCGATTGTGGCCTACCGTGATGAGAATGGTG
CCTTTAAGTCGGTGGCAGAGTTGAAGAATGTGAAGGGGATTGGCGACGGTATTTTAGCGAAGGTACGCGAAGAGGCCGTT
ACCGCCGATAATGCCGACAATGCCAATAAAAAAGCCAAACCCGCTCTGAAAAAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comE | Neisseria gonorrhoeae MS11 |
48.485 |
100 |
0.49 |
| comE | Neisseria gonorrhoeae MS11 |
48.485 |
100 |
0.49 |
| comE | Neisseria gonorrhoeae MS11 |
48.485 |
100 |
0.49 |
| comE | Neisseria gonorrhoeae MS11 |
48.485 |
100 |
0.49 |
| Cj0011c | Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819 |
47.436 |
79.592 |
0.378 |
| comEA | Vibrio cholerae C6706 |
59.016 |
62.245 |
0.367 |
| comEA | Vibrio cholerae strain A1552 |
59.016 |
62.245 |
0.367 |