Detailed information    

insolico Bioinformatically predicted

Overview

Name   recB   Type   Machinery gene
Locus tag   D0T90_RS00550 Genome accession   NZ_CP031699
Coordinates   112891..116520 (+) Length   1209 a.a.
NCBI ID   WP_123795446.1    Uniprot ID   A0A5P3MQ41
Organism   Neisseria animalis strain ATCC 49930     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 107891..121520
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0T90_RS00530 (D0T90_00535) ispD 108772..109473 (-) 702 WP_123795442.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  D0T90_RS00535 (D0T90_00540) dnaQ 109470..110192 (-) 723 WP_123795443.1 DNA polymerase III subunit epsilon -
  D0T90_RS00540 (D0T90_00545) - 110338..111795 (+) 1458 WP_123795444.1 patatin-like phospholipase family protein -
  D0T90_RS00545 (D0T90_00550) - 112067..112789 (+) 723 WP_123795445.1 epoxyqueuosine reductase QueH -
  D0T90_RS00550 (D0T90_00555) recB 112891..116520 (+) 3630 WP_123795446.1 exodeoxyribonuclease V subunit beta Machinery gene
  D0T90_RS00555 (D0T90_00560) rbfA 116638..117009 (+) 372 WP_123795447.1 30S ribosome-binding factor RbfA -
  D0T90_RS00560 (D0T90_00565) - 117351..118424 (+) 1074 WP_123795448.1 ionic transporter y4hA -
  D0T90_RS00565 (D0T90_00570) truB 118625..119536 (+) 912 WP_126325848.1 tRNA pseudouridine(55) synthase TruB -

Sequence

Protein


Download         Length: 1209 a.a.        Molecular weight: 136523.69 Da        Isoelectric Point: 6.4023

>NTDB_id=310499 D0T90_RS00550 WP_123795446.1 112891..116520(+) (recB) [Neisseria animalis strain ATCC 49930]
MTTAQPFHPLLVPISGTNLIEASAGTGKTYGIAALFTRLVVLEQMPVENILVVTFTKAATAELKTRLRNRLDNVLQILEA
VENANENTDGLTMYCHQEYAGDTFLPELLQKALAQETQARLVVRLKAAIGQFDNAAIYTIHGFCQRILRDYAFLCQTQFD
VELSEEQHDRLLVPAQDFWRKRVSHDPVTARLVFKHNQTPQKILQGIQRFINRPYLVCRRPENDLPQAQHQAAETWQSIR
LKLADLEETFWRVHPALNGNSYKKNTFANLFAVLKTADGQNRLPEHSDKPLDKLPMFAADILEAKIKKGQTPDLAAFADL
QALANLGRDLERLAAAEQHALTLLQLDLLEHLNSALAQQKKTRRERGFDDLLLDVYTALTDNPHRHTLAETVAQNWRVAL
IDEFQDTDPLQYEIFRKIFINQERPLFLVGDPKQAIYSFRGADIYAYLQAAADARSHYTLTVNYRSHAKLVNSIGALFRQ
KDRPFVLANIDYAEVGAAREHSRLNPPRPAVSVRWLNQNTGKSENKDLLRKQAAEYCADEIAYALFEAAKGRLHFKDRPL
QSGDIAVLVRTHNEGSLIAKSLKKRKIQSVLLHRESVFATAEAAALAALIGFWLTRRTADLRFVLGSVLFHYTAEQLYAL
NQDDAALLAWTDSAREAATLWKQHGFYAAMQGFAARHHIETRLLADGMERSLTNYQQLLELLAAEDEQSRTPASLHKWLL
EQIHAATEDKAAGEHHTVRLESDEALVKIVTMHASKGLQYPLVYCPFVWDAAAIKPNDWQILHRRDGSSELLAKQQLDEA
DQIQLGDETASENLRLLYVALTRAEEQLNIYAGHCSNTADNTFAYLLEGGAAAERQNVHQTYKNEKNAAAQAQMLKNNWL
RFIEAQQHNPDVEFAFTEEAPYTAFIANRSENAACRFQAAEIPARRFEFVRHTSFTGLSRHVKTVESEREELQPAVDAAE
SAILPEMPSANPHTDDVCHTIHHFPRGVKAGVCLHEILERLDFSAPAIEQSTQTAEILARYGFEDIWLPAVNAMIDYCRT
TPLTGNHALGNIKAACRLPEMGFTLYMRDFNLTALRAWFARPDSGLPPECIQASEHLDFQDLQGFLNGFIDMVCQDADGN
VCVIDYKSNHLGNDETAYTTAAMNEAMAHHHYYLQALIYAIAVARHFKLRGQTLEKISARYLFLRGMDGSQNGIWSWDIP
TADLTEWLS

Nucleotide


Download         Length: 3630 bp        

>NTDB_id=310499 D0T90_RS00550 WP_123795446.1 112891..116520(+) (recB) [Neisseria animalis strain ATCC 49930]
ATGACCACCGCCCAGCCTTTCCACCCTCTGCTCGTTCCCATCAGCGGCACCAACCTGATTGAAGCCTCCGCCGGCACAGG
CAAAACATACGGCATTGCCGCGCTGTTTACCCGGCTGGTGGTACTGGAACAAATGCCGGTAGAAAACATTTTAGTCGTTA
CCTTCACCAAAGCAGCAACCGCCGAATTGAAAACCCGTCTGCGTAACCGGCTGGACAACGTCTTGCAGATTTTAGAAGCC
GTTGAAAACGCAAACGAAAATACAGACGGCCTTACCATGTACTGCCATCAGGAATATGCCGGAGACACCTTTCTGCCCGA
GCTGCTGCAAAAAGCCTTGGCACAAGAAACCCAAGCGCGGCTGGTGGTACGCCTGAAAGCCGCCATCGGACAATTCGACA
ACGCTGCCATTTACACCATACACGGCTTCTGCCAACGCATCTTGCGCGACTACGCTTTTCTCTGCCAAACGCAATTCGAC
GTAGAATTAAGCGAAGAGCAGCACGACCGCCTGCTTGTTCCCGCACAAGACTTCTGGCGCAAACGGGTCAGCCACGACCC
CGTTACCGCCCGTCTGGTCTTCAAGCACAACCAAACCCCGCAGAAAATCCTGCAGGGGATACAACGTTTCATCAACCGCC
CCTATCTGGTTTGCAGACGGCCTGAAAACGATTTGCCGCAAGCGCAGCATCAGGCTGCCGAAACATGGCAGAGCATCCGC
CTGAAACTGGCGGATTTGGAAGAAACATTCTGGCGCGTCCACCCCGCCCTAAACGGCAACAGCTACAAGAAAAACACCTT
TGCCAACCTGTTTGCCGTGCTCAAAACCGCAGACGGCCAAAACCGGCTGCCGGAACACAGCGACAAACCGCTCGACAAGC
TGCCGATGTTTGCCGCCGACATACTGGAAGCAAAAATCAAAAAAGGCCAAACTCCCGACCTTGCCGCCTTTGCCGACTTG
CAGGCTCTGGCAAACTTAGGACGCGACTTGGAGCGTCTTGCCGCAGCAGAACAACACGCCCTGACCCTGTTACAGCTCGA
CCTGCTCGAACACCTGAACAGCGCGCTGGCGCAACAGAAAAAAACGCGCCGCGAACGCGGTTTCGATGATCTGCTGCTGG
ATGTTTACACCGCCCTGACCGACAATCCCCACCGCCACACACTTGCCGAAACCGTGGCGCAAAACTGGCGCGTCGCACTG
ATCGACGAATTTCAGGATACCGATCCCTTACAGTACGAAATCTTCCGAAAAATATTCATCAACCAAGAACGCCCGTTGTT
TTTAGTCGGCGACCCCAAGCAGGCCATTTACAGCTTTCGCGGTGCAGATATTTATGCCTACCTGCAAGCTGCCGCCGATG
CCCGCTCCCATTACACGCTGACCGTCAACTACCGCAGCCATGCCAAACTGGTCAACAGCATCGGCGCGCTGTTCCGCCAA
AAAGACCGCCCGTTTGTGTTAGCAAACATCGACTATGCAGAAGTCGGCGCCGCACGCGAACACAGCCGCCTGAATCCGCC
ACGCCCCGCCGTAAGCGTCCGCTGGCTGAACCAAAACACCGGCAAAAGCGAAAACAAAGACCTGCTCCGCAAACAAGCAG
CGGAATATTGTGCCGATGAAATTGCCTATGCGCTTTTTGAGGCCGCCAAAGGCCGTCTGCATTTTAAAGACCGCCCGTTG
CAGTCAGGCGACATTGCTGTCTTGGTTCGGACGCACAACGAAGGCAGCCTTATTGCCAAGTCTCTGAAAAAAAGAAAAAT
CCAAAGCGTACTGCTGCACCGCGAATCGGTATTTGCCACAGCCGAAGCCGCCGCGCTGGCCGCCCTTATCGGTTTTTGGC
TTACCCGCCGCACCGCAGATTTACGTTTCGTTTTGGGCAGCGTTCTGTTTCATTACACCGCAGAGCAGTTGTACGCACTC
AACCAAGACGATGCCGCCTTGCTTGCATGGACAGACTCCGCCCGCGAAGCCGCAACATTATGGAAACAGCACGGTTTTTA
CGCCGCCATGCAAGGCTTTGCCGCCCGGCACCATATCGAAACCCGCCTGCTTGCAGACGGCATGGAGCGCAGCCTGACCA
ACTACCAGCAATTATTAGAGCTGCTTGCGGCCGAAGACGAGCAAAGCCGCACGCCCGCGTCCCTGCACAAATGGCTGCTG
GAACAAATTCATGCCGCCACCGAAGACAAAGCCGCAGGCGAACACCACACCGTGCGTTTGGAAAGCGACGAAGCCTTGGT
CAAAATCGTAACCATGCATGCTTCCAAAGGTTTGCAGTATCCCTTGGTGTACTGCCCGTTTGTTTGGGACGCCGCCGCCA
TCAAACCCAACGATTGGCAGATTCTGCACCGCCGAGACGGTTCTTCCGAGCTGTTGGCCAAACAGCAGCTTGACGAAGCC
GATCAAATCCAGCTTGGCGATGAAACCGCCTCCGAAAACCTGCGCTTGCTGTATGTTGCCCTAACCCGTGCCGAAGAACA
GCTGAACATCTATGCCGGACATTGTTCCAATACTGCCGACAATACGTTTGCCTACCTGCTCGAAGGCGGCGCAGCGGCAG
AACGTCAAAATGTGCATCAAACTTATAAAAACGAAAAAAATGCAGCGGCACAGGCGCAGATGTTGAAAAATAATTGGCTC
AGGTTTATCGAAGCCCAACAGCATAATCCTGATGTTGAATTTGCTTTCACGGAAGAAGCACCTTATACTGCTTTTATTGC
CAACCGCAGTGAAAACGCTGCCTGCCGTTTTCAAGCAGCCGAAATTCCGGCACGCCGGTTTGAGTTTGTCCGCCACACCA
GTTTTACCGGTCTCAGCCGCCATGTGAAAACCGTTGAAAGCGAACGCGAAGAATTGCAGCCGGCCGTTGATGCCGCCGAA
AGCGCAATACTGCCTGAAATGCCGTCTGCAAATCCGCATACGGACGATGTGTGCCACACTATCCACCACTTCCCGCGCGG
CGTGAAAGCCGGGGTGTGCCTGCATGAAATACTGGAGCGGCTCGATTTTTCCGCACCCGCCATCGAACAAAGCACGCAAA
CCGCCGAAATTCTTGCGCGATACGGGTTTGAAGACATCTGGCTGCCGGCGGTCAACGCCATGATTGATTACTGCCGTACC
ACGCCGCTTACCGGAAACCATGCGCTCGGGAACATCAAAGCCGCCTGCCGTCTGCCGGAAATGGGCTTTACCCTGTATAT
GCGAGATTTCAACCTGACTGCCTTACGCGCATGGTTTGCCCGCCCCGACAGCGGTTTGCCGCCCGAATGCATTCAAGCCT
CGGAACACTTGGACTTTCAAGATTTGCAAGGGTTTCTTAACGGCTTTATCGATATGGTCTGTCAAGATGCAGACGGCAAT
GTTTGCGTCATCGACTACAAGTCTAACCATTTGGGGAATGACGAAACCGCCTATACCACCGCCGCCATGAACGAAGCGAT
GGCACACCATCATTACTATCTGCAAGCATTGATTTACGCCATTGCCGTTGCCCGCCATTTCAAGCTGCGCGGACAAACTT
TAGAGAAAATCTCCGCCCGCTACCTGTTTTTGCGCGGCATGGACGGTTCGCAAAACGGTATCTGGAGCTGGGACATTCCT
ACCGCAGATTTGACAGAATGGTTATCATGA

Domains

Predicted by InterproScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(1091-1185)

UvrD-like helicase C-terminal domain (UvrD_C)

(458-830)

UvrD/REP helicase N-terminal domain (UvrD-helicase)

(14-453)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5P3MQ41

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recB Neisseria gonorrhoeae strain FA1090

62.241

99.669

0.62

Multiple sequence alignment