Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   D0N50_RS20675 Genome accession   NZ_CP031695
Coordinates   4428260..4428808 (-) Length   182 a.a.
NCBI ID   WP_013200372.1    Uniprot ID   -
Organism   Erwinia billingiae strain TH88     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4423260..4433808
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D0N50_RS20665 (D0N50_20680) fhuD 4424823..4425734 (-) 912 WP_151038792.1 Fe(3+)-hydroxamate ABC transporter substrate-binding protein FhuD -
  D0N50_RS20670 (D0N50_20685) fhuE 4425724..4427964 (-) 2241 WP_151038502.1 ferric-rhodotorulic acid/ferric-coprogen receptor FhuE -
  D0N50_RS20675 (D0N50_20690) ssb 4428260..4428808 (-) 549 WP_013200372.1 single-stranded DNA-binding protein SSB1 Machinery gene
  D0N50_RS20680 (D0N50_20700) uvrA 4429113..4431944 (+) 2832 WP_013200371.1 excinuclease ABC subunit UvrA -
  D0N50_RS20685 (D0N50_20705) - 4432319..4433374 (+) 1056 WP_013200370.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19301.29 Da        Isoelectric Point: 5.2456

>NTDB_id=310455 D0N50_RS20675 WP_013200372.1 4428260..4428808(-) (ssb) [Erwinia billingiae strain TH88]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAAEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRQGGGAGAPAGGGGQGSNNGWGQPQQPQSGGNQFSGGQQARPQAQ
PQQNSAPANNEPPMDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=310455 D0N50_RS20675 WP_013200372.1 4428260..4428808(-) (ssb) [Erwinia billingiae strain TH88]
ATGGCCAGCAGAGGCGTAAACAAAGTGATCCTGGTGGGCAACCTGGGTCAAGATCCGGAAGTCCGCTACATGCCTAATGG
CGGCGCCGTTGCCAACATCACGCTGGCCACGTCCGAAAGCTGGCGTGACAAGCAAACCGGCGAAACCAAAGAAAAAACCG
AATGGCACCGGGTTGTGCTGTTTGGCAAACTGGCGGAAGTCGCGGCAGAGTACCTGCGTAAAGGTTCTCAGGTGTATATC
GAAGGCGCACTGCAGACCCGTAAATGGACTGACCAGGCTGGCGTTGAGAAGTACACCACCGAAGTGGTCGTTAACGTTGG
CGGCACCATGCAGATGCTGGGTGGACGTCAGGGCGGCGGTGCAGGCGCACCGGCTGGCGGCGGCGGTCAGGGCAGCAACA
ACGGCTGGGGCCAGCCACAGCAGCCACAGAGTGGCGGCAACCAGTTCAGCGGCGGCCAGCAGGCACGTCCGCAGGCTCAG
CCACAGCAGAACAGCGCGCCAGCTAACAACGAGCCACCAATGGACTTCGACGACGATATCCCATTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

69.565

100

0.703
  ssb Glaesserella parasuis strain SC1401

55.789

100

0.582
  ssb Neisseria meningitidis MC58

44.751

99.451

0.445
  ssb Neisseria gonorrhoeae MS11

44.199

99.451

0.44
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.778

98.901

0.374

Multiple sequence alignment