Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   CH556_RS09110 Genome accession   NZ_CP031692
Coordinates   1817378..1817725 (-) Length   115 a.a.
NCBI ID   WP_048949984.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1812378..1822725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS09085 (CH556_09085) otnI 1812845..1813621 (-) 777 WP_112071404.1 2-oxo-tetronate isomerase -
  CH556_RS09090 (CH556_09090) otnC 1813624..1814256 (-) 633 WP_005647883.1 3-oxo-tetronate 4-phosphate decarboxylase -
  CH556_RS09095 (CH556_09095) otnK 1814253..1815494 (-) 1242 WP_116945057.1 3-oxo-tetronate kinase -
  CH556_RS09100 (CH556_09100) ltnD 1815497..1816402 (-) 906 WP_015702001.1 L-threonate dehydrogenase -
  CH556_RS09105 (CH556_09105) - 1816573..1817331 (+) 759 WP_162877132.1 DeoR/GlpR family DNA-binding transcription regulator -
  CH556_RS09110 (CH556_09110) comE1/comEA 1817378..1817725 (-) 348 WP_048949984.1 helix-hairpin-helix domain-containing protein Machinery gene
  CH556_RS09115 (CH556_09115) ispH 1817894..1818838 (-) 945 WP_005659294.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CH556_RS09120 (CH556_09120) lspA 1818835..1819350 (-) 516 WP_014550968.1 signal peptidase II -
  CH556_RS09125 (CH556_09125) - 1819420..1820979 (-) 1560 WP_105894435.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12327.11 Da        Isoelectric Point: 8.0085

>NTDB_id=310284 CH556_RS09110 WP_048949984.1 1817378..1817725(-) (comE1/comEA) [Haemophilus influenzae strain P595-8370]
MKLMKTLFTSVVLCGALVASSSFAEEKATEQTAQSVVTTQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=310284 CH556_RS09110 WP_048949984.1 1817378..1817725(-) (comE1/comEA) [Haemophilus influenzae strain P595-8370]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGCGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAATCTGTTGTAACAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATTAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

97.321

97.391

0.948
  comEA/comE1 Glaesserella parasuis strain SC1401

58.261

100

0.583
  comEA Vibrio cholerae C6706

41.441

96.522

0.4
  comEA Vibrio cholerae strain A1552

41.441

96.522

0.4
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391

Multiple sequence alignment