Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CH556_RS08640 Genome accession   NZ_CP031692
Coordinates   1720294..1721823 (+) Length   509 a.a.
NCBI ID   WP_005693440.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P595-8370     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1715294..1726823
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH556_RS08615 (CH556_08615) oppC 1715640..1716575 (+) 936 WP_116945106.1 oligopeptide ABC transporter permease OppC -
  CH556_RS08620 (CH556_08620) - 1716585..1717556 (+) 972 WP_005651797.1 ABC transporter ATP-binding protein -
  CH556_RS08625 (CH556_08625) oppF 1717553..1718551 (+) 999 WP_005657282.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  CH556_RS08630 (CH556_08630) - 1718591..1719457 (-) 867 WP_005670794.1 VirK/YbjX family protein -
  CH556_RS08635 (CH556_08635) yihA 1719562..1720179 (+) 618 WP_005657287.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CH556_RS08640 (CH556_08640) comM 1720294..1721823 (+) 1530 WP_005693440.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CH556_RS08645 (CH556_08645) deoC 1721857..1722528 (-) 672 WP_116945104.1 deoxyribose-phosphate aldolase -
  CH556_RS08650 (CH556_08650) - 1722638..1723141 (+) 504 WP_005651783.1 protein disulfide oxidoreductase -
  CH556_RS08655 (CH556_08655) rfaD 1723194..1724120 (+) 927 WP_116945102.1 ADP-glyceromanno-heptose 6-epimerase -
  CH556_RS08660 (CH556_08660) xylB 1724171..1725652 (-) 1482 WP_162877130.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55871.35 Da        Isoelectric Point: 9.7683

>NTDB_id=310283 CH556_RS08640 WP_005693440.1 1720294..1721823(+) (comM) [Haemophilus influenzae strain P595-8370]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASHLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNGQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=310283 CH556_RS08640 WP_005693440.1 1720294..1721823(+) (comM) [Haemophilus influenzae strain P595-8370]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCGCCGCTAGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGATCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACTGTAAATCTTGCACCTGCGGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCTATCGGGATTTTAGCCGCATCAGATCAGCTTGATGCGAGCCACTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGACAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCACAAACGCTT
TTAGATGTAGTGCAATTTCTCAATGGTCAGGAAAAATTACCCCTCGCAACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCGG
GGCAGCATAATTTGCTCTTTCTTGGCCCACCGGGTACAGGAAAAACCATGTTAGCCAGCCGTTTGACAGGGCTTTTACCT
GAAATGACAGATTTAGAAGCGATAGAAACAGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCCCCGCATCATAGTGCATCAATGCCTGCTTTAGTTGGTGGCGGAACGATCCCTAAACCAGGCG
AAATATCCTTAGCAACAAATGGGGTACTGTTTCTTGATGAACTTCCAGAGTTTGAACGAAAAGTGTTAGATGCACTACGT
CAGCCTTTAGAAAGTGGTGAGATTATTATTTCTCGTGCTAATGCCAAAATTCAATTTCCGGCTCGTTTTCAATTAGTGGC
AGCGATGAATCCAAGCCCTACAGGCCATTATACTGGGACACATAACCGCACTTCGCCGCAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTATTGCCACAAGGTAGCTTACAAAAT
ACAGGTGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.607

100

0.996
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.456

99.607

0.672
  comM Vibrio campbellii strain DS40M4

66.075

99.607

0.658
  comM Legionella pneumophila str. Paris

51.093

98.821

0.505
  comM Legionella pneumophila strain ERS1305867

51.093

98.821

0.505
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment