Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   ES276_RS08130 Genome accession   NZ_CP038252
Coordinates   1598944..1599513 (-) Length   189 a.a.
NCBI ID   WP_162010077.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain TVO_1901936     
Function   processing and transport of ComC (predicted from homology)   
Competence regulation

Genomic Context

Location: 1593944..1604513
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES276_RS08100 (ES276_08615) - 1594277..1595212 (+) 936 WP_000401779.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  ES276_RS08105 (ES276_08620) - 1595308..1595550 (+) 243 WP_000710764.1 type B 50S ribosomal protein L31 -
  ES276_RS08110 (ES276_08625) - 1595607..1595825 (-) 219 WP_000028150.1 hypothetical protein -
  ES276_RS08115 (ES276_08630) - 1595822..1596573 (-) 752 Protein_1597 transposase -
  ES276_RS08120 (ES276_08635) gdhA 1596909..1598255 (+) 1347 WP_000199560.1 NADP-specific glutamate dehydrogenase -
  ES276_RS08125 (ES276_08645) - 1598761..1598931 (-) 171 WP_000711943.1 hypothetical protein -
  ES276_RS08130 (ES276_08650) comA 1598944..1599513 (-) 570 WP_162010077.1 ATP-binding cassette domain-containing protein Regulator
  ES276_RS08135 (ES276_08655) - 1599539..1600344 (-) 806 Protein_1601 IS5 family transposase -
  ES276_RS08140 (ES276_08670) - 1600600..1601647 (+) 1048 WP_225532208.1 IS630 family transposase -
  ES276_RS08145 (ES276_08675) - 1601759..1602208 (-) 450 WP_000424226.1 YhcH/YjgK/YiaL family protein -
  ES276_RS08150 (ES276_08680) cdd 1602221..1602627 (-) 407 Protein_1604 cytidine deaminase -
  ES276_RS08160 (ES276_08685) - 1602714..1603169 (-) 456 WP_001000318.1 HIT family protein -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 21124.54 Da        Isoelectric Point: 8.4353

>NTDB_id=310257 ES276_RS08130 WP_162010077.1 1598944..1599513(-) (comA) [Streptococcus pneumoniae strain TVO_1901936]
MPSGLYKIDTGKVLFDGVNINQIDKKILSQNLGVVPQDSFLLNRSILDNITLKHEVTSQKIEEVCKAVQIYDEIMAMPMK
FNTIISEMGSNISGGQRQRIALARALINNPSIVILDEATSALDTINEERITKYIQSQGCTQIIIAHRLSTIKDADIIFVM
KGGKIVESGNHKYLMTLGGEYYSLYTKRK

Nucleotide


Download         Length: 570 bp        

>NTDB_id=310257 ES276_RS08130 WP_162010077.1 1598944..1599513(-) (comA) [Streptococcus pneumoniae strain TVO_1901936]
ATACCATCAGGATTATATAAGATTGATACAGGAAAAGTTTTATTTGATGGTGTAAATATTAATCAAATAGATAAAAAAAT
ATTAAGTCAAAATTTAGGAGTAGTTCCACAGGATTCATTTTTATTGAACCGAAGTATTCTTGATAATATAACTTTAAAGC
ACGAAGTTACTTCACAAAAGATAGAGGAAGTTTGTAAAGCAGTTCAAATCTATGATGAAATCATGGCTATGCCGATGAAA
TTTAATACTATCATCTCAGAGATGGGGTCAAATATTTCAGGTGGGCAAAGGCAACGGATAGCACTGGCACGTGCATTAAT
AAATAATCCTAGTATTGTAATTTTAGATGAAGCAACTAGTGCATTAGACACTATTAATGAGGAAAGAATAACAAAGTATA
TACAAAGTCAGGGTTGTACTCAAATAATTATAGCTCATAGATTGTCAACGATTAAGGATGCGGATATTATTTTTGTAATG
AAAGGTGGTAAGATTGTTGAGTCAGGAAATCATAAGTACTTAATGACTCTTGGTGGAGAGTACTACAGCTTATATACAAA
AAGGAAATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(3-120)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Streptococcus mitis NCTC 12261

42.473

98.413

0.418
  comA Streptococcus gordonii str. Challis substr. CH1

42.391

97.354

0.413
  comA Streptococcus mitis SK321

41.935

98.413

0.413
  comA/nlmT Streptococcus mutans UA159

41.848

97.354

0.407
  comA Streptococcus pneumoniae R6

41.398

98.413

0.407
  comA Streptococcus pneumoniae Rx1

41.398

98.413

0.407
  comA Streptococcus pneumoniae D39

41.398

98.413

0.407
  comA Streptococcus pneumoniae TIGR4

40.323

98.413

0.397
  rcrQ Streptococcus mutans UA159

36.702

99.471

0.365