Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH576_RS02975 | Genome accession | NZ_CP031691 |
| Coordinates | 596409..596822 (+) | Length | 137 a.a. |
| NCBI ID | WP_116941729.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P615-8618 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 591409..601822
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH576_RS02955 (CH576_02955) | - | 591897..594491 (-) | 2595 | WP_116941736.1 | penicillin-binding protein 1A | - |
| CH576_RS02960 (CH576_02960) | comA | 594590..595387 (+) | 798 | WP_116941735.1 | pilus assembly protein PilM | Machinery gene |
| CH576_RS02965 (CH576_02965) | comB | 595388..595894 (+) | 507 | WP_116941733.1 | competence protein ComB | Machinery gene |
| CH576_RS02970 (CH576_02970) | comC | 595891..596412 (+) | 522 | WP_116941731.1 | competence protein ComC | Machinery gene |
| CH576_RS02975 (CH576_02975) | comD | 596409..596822 (+) | 414 | WP_116941729.1 | pilus assembly protein PilP | Machinery gene |
| CH576_RS02980 (CH576_02980) | comE | 596832..598175 (+) | 1344 | WP_116941727.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CH576_RS02985 (CH576_02985) | tnpA | 598172..598627 (+) | 456 | WP_105894588.1 | IS200/IS605 family transposase | - |
| CH576_RS02990 (CH576_02990) | - | 598916..599602 (+) | 687 | WP_105894589.1 | ComF family protein | - |
| CH576_RS02995 (CH576_02995) | nfuA | 599678..600274 (+) | 597 | WP_050847361.1 | Fe-S biogenesis protein NfuA | - |
| CH576_RS03000 (CH576_03000) | nudC | 600342..601136 (+) | 795 | WP_105894590.1 | NAD(+) diphosphatase | - |
| CH576_RS03005 (CH576_03005) | - | 601172..601762 (+) | 591 | WP_042594795.1 | YjaG family protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15643.84 Da Isoelectric Point: 4.7187
>NTDB_id=310232 CH576_RS02975 WP_116941729.1 596409..596822(+) (comD) [Haemophilus influenzae strain P615-8618]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGIDVAKEGYIVEKINQKNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADENRQAAEIPLNALKLVGVVISKD
KAFALLQDQALQVYSVLEGIDVAKEGYIVEKINQKNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=310232 CH576_RS02975 WP_116941729.1 596409..596822(+) (comD) [Haemophilus influenzae strain P615-8618]
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCATTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTAAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAAAAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACTGCATTGCTTTTTATAAATTGCAGTTGGGGGCAGGATCCTTTCGATAAAACACAACG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAAAATCGCCAAGCGGCTGAAATTCCCTTGAATGCTTTAAAATTGGTGGGCGTAGTGATTTCTAAAGAT
AAAGCCTTTGCATTATTGCAAGATCAGGCTTTGCAAGTTTACAGCGTTTTAGAGGGCATTGATGTGGCTAAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAAAAATGTTCAATTTATGCGCAAGCTCGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae Rd KW20 |
93.431 |
100 |
0.934 |
| comD | Haemophilus influenzae 86-028NP |
92.701 |
100 |
0.927 |