Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   CH576_RS02970 Genome accession   NZ_CP031691
Coordinates   595891..596412 (+) Length   173 a.a.
NCBI ID   WP_116941731.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P615-8618     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 590891..601412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH576_RS02950 (CH576_02950) - 590980..591825 (-) 846 WP_112088382.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH576_RS02955 (CH576_02955) - 591897..594491 (-) 2595 WP_116941736.1 penicillin-binding protein 1A -
  CH576_RS02960 (CH576_02960) comA 594590..595387 (+) 798 WP_116941735.1 pilus assembly protein PilM Machinery gene
  CH576_RS02965 (CH576_02965) comB 595388..595894 (+) 507 WP_116941733.1 competence protein ComB Machinery gene
  CH576_RS02970 (CH576_02970) comC 595891..596412 (+) 522 WP_116941731.1 competence protein ComC Machinery gene
  CH576_RS02975 (CH576_02975) comD 596409..596822 (+) 414 WP_116941729.1 pilus assembly protein PilP Machinery gene
  CH576_RS02980 (CH576_02980) comE 596832..598175 (+) 1344 WP_116941727.1 type IV pilus secretin PilQ family protein Machinery gene
  CH576_RS02985 (CH576_02985) tnpA 598172..598627 (+) 456 WP_105894588.1 IS200/IS605 family transposase -
  CH576_RS02990 (CH576_02990) - 598916..599602 (+) 687 WP_105894589.1 ComF family protein -
  CH576_RS02995 (CH576_02995) nfuA 599678..600274 (+) 597 WP_050847361.1 Fe-S biogenesis protein NfuA -
  CH576_RS03000 (CH576_03000) nudC 600342..601136 (+) 795 WP_105894590.1 NAD(+) diphosphatase -

Sequence

Protein


Download         Length: 173 a.a.        Molecular weight: 19970.18 Da        Isoelectric Point: 9.4273

>NTDB_id=310231 CH576_RS02970 WP_116941731.1 595891..596412(+) (comC) [Haemophilus influenzae strain P615-8618]
MKAFFNDPFTPFGKWLSQPFYVHGLTFLLLLSAVIFRPVLDYIEASTRFAETEYELAKKSSELLHQQKILTSLQQQSESR
KLSPELAAQIMPLHKQIQRLAALNGLSQHLRWEMGQQPILHLQLTGHFEKTKTFLTALLANTSQLSVSRLQFMKPEDSPL
QTEIIFQLEKETK

Nucleotide


Download         Length: 522 bp        

>NTDB_id=310231 CH576_RS02970 WP_116941731.1 595891..596412(+) (comC) [Haemophilus influenzae strain P615-8618]
ATGAAAGCTTTTTTTAACGATCCTTTTACTCCTTTTGGAAAATGGCTAAGCCAGCCTTTTTATGTGCATGGTTTAACCTT
TTTATTGCTATTAAGTGCGGTGATTTTTCGCCCCGTTTTAGATTATATAGAGGCTAGTACGCGTTTTGCTGAAACTGAAT
ATGAATTAGCAAAGAAAAGTTCGGAATTGCTACATCAACAGAAAATTTTAACTTCTTTACAGCAGCAATCGGAAAGTCGA
AAACTTTCTCCAGAACTGGCTGCACAAATTATGCCGTTGCATAAACAAATTCAACGTTTAGCTGCACTCAACGGTTTATC
TCAGCATTTACGTTGGGAAATGGGGCAACAGCCTATTTTGCATTTACAGCTTACAGGGCATTTTGAAAAAACGAAGACAT
TTTTAACCGCACTTTTAGCTAATACGTCACAGCTTTCAGTAAGTCGGCTGCAATTTATGAAACCTGAAGACAGCCCATTG
CAAACCGAGATTATTTTTCAGCTAGAGAAGGAGACAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Haemophilus influenzae 86-028NP

91.329

100

0.913
  comC Haemophilus influenzae Rd KW20

91.329

100

0.913

Multiple sequence alignment