Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CH576_RS02960 Genome accession   NZ_CP031691
Coordinates   594590..595387 (+) Length   265 a.a.
NCBI ID   WP_116941735.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P615-8618     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 589590..600387
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH576_RS02940 (CH576_02940) recR 589766..590368 (-) 603 WP_005626527.1 recombination mediator RecR -
  CH576_RS02945 (CH576_02945) - 590498..590827 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CH576_RS02950 (CH576_02950) - 590980..591825 (-) 846 WP_112088382.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH576_RS02955 (CH576_02955) - 591897..594491 (-) 2595 WP_116941736.1 penicillin-binding protein 1A -
  CH576_RS02960 (CH576_02960) comA 594590..595387 (+) 798 WP_116941735.1 pilus assembly protein PilM Machinery gene
  CH576_RS02965 (CH576_02965) comB 595388..595894 (+) 507 WP_116941733.1 competence protein ComB Machinery gene
  CH576_RS02970 (CH576_02970) comC 595891..596412 (+) 522 WP_116941731.1 competence protein ComC Machinery gene
  CH576_RS02975 (CH576_02975) comD 596409..596822 (+) 414 WP_116941729.1 pilus assembly protein PilP Machinery gene
  CH576_RS02980 (CH576_02980) comE 596832..598175 (+) 1344 WP_116941727.1 type IV pilus secretin PilQ family protein Machinery gene
  CH576_RS02985 (CH576_02985) tnpA 598172..598627 (+) 456 WP_105894588.1 IS200/IS605 family transposase -
  CH576_RS02990 (CH576_02990) - 598916..599602 (+) 687 WP_105894589.1 ComF family protein -
  CH576_RS02995 (CH576_02995) nfuA 599678..600274 (+) 597 WP_050847361.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31373.66 Da        Isoelectric Point: 5.8882

>NTDB_id=310229 CH576_RS02960 WP_116941735.1 594590..595387(+) (comA) [Haemophilus influenzae strain P615-8618]
MQFSLKNYLTLQIGIHRKQGYFDFVWFDDLEQPQSYQIFVNDRDFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVLEKELPISLDELWFDYRSTSLKQGFRLDVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLPEHWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=310229 CH576_RS02960 WP_116941735.1 594590..595387(+) (comA) [Haemophilus influenzae strain P615-8618]
ATGCAATTCTCCCTGAAAAATTACCTCACTTTACAAATCGGCATTCATCGTAAGCAGGGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAACAGCCACAAAGTTATCAAATTTTTGTTAATGATCGTGATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTACAGTTTGTGGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGCTTGAAAAAGAGCTGCCTATTTCTTT
AGATGAATTATGGTTTGATTATCGTTCTACCTCGTTAAAGCAAGGTTTTCGATTAGACGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGTTTGGCGAT
TTGTGAAAGATCGCAGCAATCGCAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGGCAACTTGAACAAGTTTTTGTGTATCAAATTCCCTCAAGTCATACGCCATTACCAGAACACTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae 86-028NP

98.491

100

0.985
  comA Haemophilus influenzae Rd KW20

95.094

100

0.951

Multiple sequence alignment