Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   CH621_RS09510 Genome accession   NZ_CP031683
Coordinates   1887342..1887689 (-) Length   115 a.a.
NCBI ID   WP_005686287.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P662-7189     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1882342..1892689
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH621_RS09490 (CH621_09490) bioB 1882731..1883732 (-) 1002 WP_105872430.1 biotin synthase BioB -
  CH621_RS09495 (CH621_09495) thiQ 1883845..1884492 (-) 648 WP_005647864.1 thiamine ABC transporter ATP-binding protein -
  CH621_RS09500 (CH621_09500) thiP 1884476..1886092 (-) 1617 WP_050838209.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  CH621_RS09505 (CH621_09505) thiB 1886097..1887095 (-) 999 WP_005686289.1 thiamine ABC transporter substrate binding subunit -
  CH621_RS09510 (CH621_09510) comE1/comEA 1887342..1887689 (-) 348 WP_005686287.1 helix-hairpin-helix domain-containing protein Machinery gene
  CH621_RS09515 (CH621_09515) ispH 1887858..1888802 (-) 945 WP_005651634.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CH621_RS09520 (CH621_09520) lspA 1888799..1889314 (-) 516 WP_005655980.1 signal peptidase II -
  CH621_RS09525 (CH621_09525) - 1889384..1890943 (-) 1560 WP_032821875.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12363.23 Da        Isoelectric Point: 8.0085

>NTDB_id=309966 CH621_RS09510 WP_005686287.1 1887342..1887689(-) (comE1/comEA) [Haemophilus influenzae strain P662-7189]
MKLMKTLFTSVVLCGVLVVSSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=309966 CH621_RS09510 WP_005686287.1 1887342..1887689(-) (comE1/comEA) [Haemophilus influenzae strain P662-7189]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGTGCTGGTTGTTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

95.536

97.391

0.93
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

39.286

97.391

0.383
  comEA Acinetobacter baumannii strain A118

32.824

100

0.374

Multiple sequence alignment