Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   CH624_RS09155 Genome accession   NZ_CP031682
Coordinates   1783690..1785219 (+) Length   509 a.a.
NCBI ID   WP_042611683.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P665-7858     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 1778690..1790219
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH624_RS09130 (CH624_09125) oppC 1779036..1779971 (+) 936 WP_112109681.1 oligopeptide ABC transporter permease OppC -
  CH624_RS09135 (CH624_09130) - 1779981..1780952 (+) 972 WP_005670792.1 ABC transporter ATP-binding protein -
  CH624_RS09140 (CH624_09135) oppF 1780949..1781947 (+) 999 WP_042611681.1 murein tripeptide/oligopeptide ABC transporter ATP binding protein OppF -
  CH624_RS09145 (CH624_09140) - 1781987..1782853 (-) 867 WP_005686419.1 VirK/YbjX family protein -
  CH624_RS09150 (CH624_09145) yihA 1782958..1783575 (+) 618 WP_005662749.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  CH624_RS09155 (CH624_09150) comM 1783690..1785219 (+) 1530 WP_042611683.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  CH624_RS09160 (CH624_09155) deoC 1785253..1785924 (-) 672 WP_112109683.1 deoxyribose-phosphate aldolase -
  CH624_RS09165 (CH624_09160) - 1786035..1786538 (+) 504 WP_042611685.1 protein disulfide oxidoreductase -
  CH624_RS09170 (CH624_09165) rfaD 1786591..1787517 (+) 927 WP_112109684.1 ADP-glyceromanno-heptose 6-epimerase -
  CH624_RS09175 (CH624_09170) xylB 1787568..1789049 (-) 1482 WP_162692265.1 xylulokinase -

Sequence

Protein


Download         Length: 509 a.a.        Molecular weight: 55920.42 Da        Isoelectric Point: 9.8668

>NTDB_id=309931 CH624_RS09155 WP_042611683.1 1783690..1785219(+) (comM) [Haemophilus influenzae strain P665-7858]
MSLAIVYSRASMGVQAPLVTIEVHLSNGKPGFTLVGLPEKTVKEAQDRVRSALMNAQFKYPAKRITVNLAPADLPKEGGR
FDLPIAIGILAASDQLDASRLKQFEFVAELALTGQLRGVHGVIPAILAAQKSKRELIIAKQNANEASLVSDQNTYFAQTL
LDVVQFLNSQEKLPLATEIVKESAVNFSGKNTLDLTDIIGQQHAKRALTIAAAGQHNLLFLGPPGTGKTMLASRLTGLLP
EMTDLEAIETASVTSLVQNELNFHNWKQRPFRAPHHSASMPALVGGGTIPKPGEISLATNGVLFLDELPEFERKVLDALR
QPLESGEIIISRANAKIQFPARFQLVAAMNPSPTGHYTGTHNRTSPQQIMRYLNRLSGPFLDRFDLSIEVPLLPQGSLQN
TGDRGETSAQVREKVLKVREIQMERAGKINAYLNSKEIERDCKLNDKDAFFLEKALNKLGLSVRAYHRILKVSRTIADLQ
GEQQISQPHLAEALGYRAMDRLLQKLSNM

Nucleotide


Download         Length: 1530 bp        

>NTDB_id=309931 CH624_RS09155 WP_042611683.1 1783690..1785219(+) (comM) [Haemophilus influenzae strain P665-7858]
ATGTCCCTTGCTATTGTTTACAGCCGTGCTTCTATGGGTGTGCAAGCGCCGCTTGTCACCATTGAGGTGCATTTAAGCAA
CGGAAAACCAGGATTTACACTTGTTGGTTTGCCAGAAAAAACCGTGAAAGAGGCACAAGACCGGGTGCGTAGTGCGTTGA
TGAATGCACAATTTAAATACCCAGCCAAGCGTATCACTGTGAATCTCGCGCCTGCAGATTTACCGAAAGAAGGCGGAAGA
TTTGATTTGCCTATTGCCATCGGAATTTTAGCCGCATCAGATCAGCTTGATGCGAGCCGCTTAAAGCAATTTGAATTTGT
GGCTGAACTTGCGCTGACGGGACAATTGCGTGGCGTACATGGTGTGATTCCCGCTATTCTTGCAGCGCAAAAGTCAAAGC
GAGAGTTAATTATCGCGAAACAAAATGCTAATGAAGCCTCGCTCGTGTCTGATCAAAATACTTATTTTGCACAAACGCTT
TTAGATGTAGTGCAATTTCTCAACAGTCAGGAAAAATTACCCCTCGCTACTGAAATTGTGAAAGAAAGTGCGGTAAATTT
TTCAGGTAAAAATACGTTAGATTTAACGGATATTATTGGACAACAGCACGCTAAACGAGCATTGACCATTGCCGCAGCAG
GGCAGCATAATCTGCTCTTTCTTGGTCCTCCGGGCACAGGAAAAACAATGTTAGCTAGTCGATTAACAGGGCTTTTACCT
GAAATGACGGATTTAGAAGCGATAGAAACGGCATCTGTAACGAGTTTAGTTCAAAACGAGTTAAATTTTCATAATTGGAA
ACAACGTCCTTTTCGCGCACCACATCATAGTGCATCAATGCCAGCTTTAGTTGGTGGTGGGACGATCCCTAAACCTGGCG
AAATATCCTTAGCAACAAATGGGGTACTTTTTCTTGATGAACTTCCAGAATTTGAGCGAAAAGTGTTAGATGCACTACGT
CAGCCTTTGGAAAGTGGCGAGATTATTATTTCTCGTGCTAATGCCAAAATTCAATTTCCGGCTCGTTTTCAATTAGTCGC
AGCGATGAATCCAAGCCCCACAGGTCATTATACTGGAACACATAACCGCACTTCGCCGCAACAAATTATGCGTTATTTGA
ATCGACTTTCAGGGCCCTTTTTAGATCGTTTTGATTTATCTATTGAAGTGCCTTTACTGCCACAAGGTAGCTTGCAAAAT
ACGGGCGATCGTGGCGAAACCAGCGCGCAAGTTCGTGAAAAAGTGTTAAAAGTGCGTGAGATTCAAATGGAAAGAGCAGG
GAAAATTAACGCTTATTTGAACAGTAAAGAGATTGAGCGTGATTGCAAGTTAAATGATAAAGATGCCTTTTTCCTTGAAA
AAGCACTGAATAAACTGGGGCTTTCTGTTCGGGCTTATCATCGTATTTTGAAAGTTTCTCGAACCATTGCCGATCTACAA
GGAGAACAACAAATTTCTCAACCGCACTTGGCGGAGGCCTTGGGCTATCGAGCAATGGATCGTTTGCTGCAGAAATTGTC
GAATATGTAA

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(194-395)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(405-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

99.214

100

0.992
  comM Glaesserella parasuis strain SC1401

79.093

99.607

0.788
  comM Vibrio cholerae strain A1552

67.258

99.607

0.67
  comM Vibrio campbellii strain DS40M4

65.878

99.607

0.656
  comM Legionella pneumophila str. Paris

51.292

98.821

0.507
  comM Legionella pneumophila strain ERS1305867

51.292

98.821

0.507
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

46.99

100

0.475

Multiple sequence alignment