Detailed information
Bioinformatically predicted
Overview
| Name | comD | Type | Machinery gene |
| Locus tag | CH624_RS03005 | Genome accession | NZ_CP031682 |
| Coordinates | 592587..593000 (+) | Length | 137 a.a. |
| NCBI ID | WP_112109797.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P665-7858 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 587587..598000
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH624_RS02985 (CH624_02985) | - | 588075..590669 (-) | 2595 | WP_112109799.1 | penicillin-binding protein 1A | - |
| CH624_RS02990 (CH624_02990) | comA | 590768..591565 (+) | 798 | WP_005652119.1 | pilus assembly protein PilM | Machinery gene |
| CH624_RS02995 (CH624_02995) | comB | 591566..592072 (+) | 507 | WP_042611002.1 | competence protein ComB | Machinery gene |
| CH624_RS03000 (CH624_03000) | comC | 592069..592590 (+) | 522 | WP_112109798.1 | competence protein ComC | Machinery gene |
| CH624_RS03005 (CH624_03005) | comD | 592587..593000 (+) | 414 | WP_112109797.1 | competence protein | Machinery gene |
| CH624_RS03010 (CH624_03010) | comE | 593010..594347 (+) | 1338 | WP_005659796.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CH624_RS03015 (CH624_03015) | - | 594360..595046 (+) | 687 | WP_116937985.1 | ComF family protein | - |
| CH624_RS03020 (CH624_03020) | nfuA | 595122..595718 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH624_RS03025 (CH624_03025) | nudC | 595785..596579 (+) | 795 | WP_116937984.1 | NAD(+) diphosphatase | - |
| CH624_RS03030 (CH624_03030) | - | 596615..597205 (+) | 591 | WP_005691398.1 | YjaG family protein | - |
| CH624_RS03035 (CH624_03035) | - | 597346..597618 (+) | 273 | WP_005630954.1 | HU family DNA-binding protein | - |
Sequence
Protein
Download Length: 137 a.a. Molecular weight: 15678.80 Da Isoelectric Point: 4.4355
>NTDB_id=309917 CH624_RS03005 WP_112109797.1 592587..593000(+) (comD) [Haemophilus influenzae strain P665-7858]
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEYRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGIDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
MKYWFFLTALLFINCSWGQDPFDKTQRNRSQFDNAQTVMEQTEIISSDVPNNLCGADEYRQAAEIPLNALKLVGVVISKD
KAFALLQDQGLQIYSVLEGIDVAQEGYIVEKINQNNVQFMRKLGEQCDSSEWKKLSF
Nucleotide
Download Length: 414 bp
>NTDB_id=309917 CH624_RS03005 WP_112109797.1 592587..593000(+) (comD) [Haemophilus influenzae strain P665-7858]
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAATATCGCCAAGCAGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
ATGAAGTATTGGTTTTTCCTAACAGCATTGCTTTTTATAAATTGCAGTTGGGGACAAGATCCTTTCGATAAAACACAGCG
TAACCGTTCTCAGTTTGATAACGCACAAACAGTAATGGAACAGACAGAAATAATTTCCTCAGATGTACCTAATAATCTAT
GCGGAGCGGATGAATATCGCCAAGCAGCTGAAATTCCTTTGAACGCTTTAAAATTGGTGGGGGTAGTGATTTCTAAAGAT
AAAGCCTTTGCCTTGTTGCAAGATCAAGGTTTGCAAATTTACAGCGTTTTAGAGGGCATTGATGTGGCTCAAGAGGGCTA
TATTGTAGAAAAAATCAACCAAAACAATGTTCAATTTATGCGCAAGCTAGGAGAGCAATGTGATAGTAGTGAATGGAAAA
AATTAAGTTTTTAA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comD | Haemophilus influenzae 86-028NP |
94.891 |
100 |
0.949 |
| comD | Haemophilus influenzae Rd KW20 |
94.161 |
100 |
0.942 |