Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | CH624_RS02995 | Genome accession | NZ_CP031682 |
| Coordinates | 591566..592072 (+) | Length | 168 a.a. |
| NCBI ID | WP_042611002.1 | Uniprot ID | - |
| Organism | Haemophilus influenzae strain P665-7858 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 586566..597072
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CH624_RS02975 (CH624_02975) | - | 586675..587004 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| CH624_RS02980 (CH624_02980) | - | 587157..588002 (-) | 846 | WP_112109800.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| CH624_RS02985 (CH624_02985) | - | 588075..590669 (-) | 2595 | WP_112109799.1 | penicillin-binding protein 1A | - |
| CH624_RS02990 (CH624_02990) | comA | 590768..591565 (+) | 798 | WP_005652119.1 | pilus assembly protein PilM | Machinery gene |
| CH624_RS02995 (CH624_02995) | comB | 591566..592072 (+) | 507 | WP_042611002.1 | competence protein ComB | Machinery gene |
| CH624_RS03000 (CH624_03000) | comC | 592069..592590 (+) | 522 | WP_112109798.1 | competence protein ComC | Machinery gene |
| CH624_RS03005 (CH624_03005) | comD | 592587..593000 (+) | 414 | WP_112109797.1 | competence protein | Machinery gene |
| CH624_RS03010 (CH624_03010) | comE | 593010..594347 (+) | 1338 | WP_005659796.1 | type IV pilus secretin PilQ family protein | Machinery gene |
| CH624_RS03015 (CH624_03015) | - | 594360..595046 (+) | 687 | WP_116937985.1 | ComF family protein | - |
| CH624_RS03020 (CH624_03020) | nfuA | 595122..595718 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| CH624_RS03025 (CH624_03025) | nudC | 595785..596579 (+) | 795 | WP_116937984.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19782.69 Da Isoelectric Point: 9.4939
>NTDB_id=309915 CH624_RS02995 WP_042611002.1 591566..592072(+) (comB) [Haemophilus influenzae strain P665-7858]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMRIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGTEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQKSFEQLNQQLHKTTMRIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGTEK
Nucleotide
Download Length: 507 bp
>NTDB_id=309915 CH624_RS02995 WP_042611002.1 591566..592072(+) (comB) [Haemophilus influenzae strain P665-7858]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCGAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGACGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAGGCACAGCAAA
AGTCGTTTGAACAACTTAATCAACAGCTTCATAAAACTACCATGCGAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCGAATAACTTAAGCTTGGAAGGTAACGCACAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGACGGAAAAATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
98.214 |
100 |
0.982 |
| comB | Haemophilus influenzae Rd KW20 |
98.214 |
100 |
0.982 |