Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   CH624_RS02990 Genome accession   NZ_CP031682
Coordinates   590768..591565 (+) Length   265 a.a.
NCBI ID   WP_005652119.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P665-7858     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 585768..596565
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH624_RS02970 (CH624_02970) recR 585942..586544 (-) 603 WP_005626527.1 recombination mediator RecR -
  CH624_RS02975 (CH624_02975) - 586675..587004 (-) 330 WP_005629464.1 YbaB/EbfC family nucleoid-associated protein -
  CH624_RS02980 (CH624_02980) - 587157..588002 (-) 846 WP_112109800.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  CH624_RS02985 (CH624_02985) - 588075..590669 (-) 2595 WP_112109799.1 penicillin-binding protein 1A -
  CH624_RS02990 (CH624_02990) comA 590768..591565 (+) 798 WP_005652119.1 pilus assembly protein PilM Machinery gene
  CH624_RS02995 (CH624_02995) comB 591566..592072 (+) 507 WP_042611002.1 competence protein ComB Machinery gene
  CH624_RS03000 (CH624_03000) comC 592069..592590 (+) 522 WP_112109798.1 competence protein ComC Machinery gene
  CH624_RS03005 (CH624_03005) comD 592587..593000 (+) 414 WP_112109797.1 competence protein Machinery gene
  CH624_RS03010 (CH624_03010) comE 593010..594347 (+) 1338 WP_005659796.1 type IV pilus secretin PilQ family protein Machinery gene
  CH624_RS03015 (CH624_03015) - 594360..595046 (+) 687 WP_116937985.1 ComF family protein -
  CH624_RS03020 (CH624_03020) nfuA 595122..595718 (+) 597 WP_005649300.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31585.99 Da        Isoelectric Point: 6.2348

>NTDB_id=309914 CH624_RS02990 WP_005652119.1 590768..591565(+) (comA) [Haemophilus influenzae strain P665-7858]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPAHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAILRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=309914 CH624_RS02990 WP_005652119.1 590768..591565(+) (comA) [Haemophilus influenzae strain P665-7858]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTTGAGCAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCGCTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCACAAGAATGTCATCAACAATGTAAATTTGTGATTGAGAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTGTTGGATGTTGCGTCAAATGCTATTTTGCGTGCA
TTTCAGTATTTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCACTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

97.358

100

0.974

Multiple sequence alignment