Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   CH631_RS09020 Genome accession   NZ_CP031680
Coordinates   1817050..1817397 (-) Length   115 a.a.
NCBI ID   WP_162877753.1    Uniprot ID   -
Organism   Haemophilus influenzae strain P672-7661     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1812050..1822397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CH631_RS09000 (CH631_09000) bioB 1812442..1813440 (-) 999 WP_105894438.1 biotin synthase BioB -
  CH631_RS09005 (CH631_09005) thiQ 1813553..1814200 (-) 648 WP_105894437.1 thiamine ABC transporter ATP-binding protein -
  CH631_RS09010 (CH631_09010) thiP 1814184..1815800 (-) 1617 WP_105894436.1 thiamine/thiamine pyrophosphate ABC transporter permease -
  CH631_RS09015 (CH631_09015) thiB 1815805..1816803 (-) 999 WP_014550965.1 thiamine ABC transporter substrate binding subunit -
  CH631_RS09020 (CH631_09020) comE1/comEA 1817050..1817397 (-) 348 WP_162877753.1 helix-hairpin-helix domain-containing protein Machinery gene
  CH631_RS09025 (CH631_09025) ispH 1817566..1818510 (-) 945 WP_005669731.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  CH631_RS09030 (CH631_09030) lspA 1818507..1819022 (-) 516 WP_005664259.1 signal peptidase II -
  CH631_RS09035 (CH631_09035) - 1819092..1820651 (-) 1560 WP_116940267.1 phosphoethanolamine transferase -

Sequence

Protein


Download         Length: 115 a.a.        Molecular weight: 12335.18 Da        Isoelectric Point: 8.0085

>NTDB_id=309863 CH631_RS09020 WP_162877753.1 1817050..1817397(-) (comE1/comEA) [Haemophilus influenzae strain P672-7661]
MKLMKTLFTSVVLCGVLVASSSFAEEKATEQTAQPVVATQAEAQVAPAVVSDKLNINTATASEIQKSLTGIGAKKAEAIV
QYREKHGNFTNAEQLLEVQGIGKATLEKNRDRIIF

Nucleotide


Download         Length: 348 bp        

>NTDB_id=309863 CH631_RS09020 WP_162877753.1 1817050..1817397(-) (comE1/comEA) [Haemophilus influenzae strain P672-7661]
ATGAAATTAATGAAAACATTATTCACTTCGGTTGTATTGTGTGGTGTGCTGGTTGCTTCTTCGTCTTTTGCTGAGGAAAA
AGCGACAGAACAAACCGCTCAACCTGTTGTAGCAACTCAAGCTGAAGCTCAAGTAGCACCAGCCGTAGTGAGCGATAAAT
TGAATATCAACACAGCAACTGCCAGTGAAATTCAAAAATCCCTAACTGGCATTGGTGCGAAAAAAGCGGAAGCTATTGTG
CAATATCGTGAAAAACACGGTAATTTTACTAATGCAGAACAGCTTTTAGAAGTACAAGGAATTGGCAAAGCAACACTAGA
GAAAAATCGTGATCGTATAATCTTTTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(52-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

94.643

97.391

0.922
  comEA/comE1 Glaesserella parasuis strain SC1401

58.772

99.13

0.583
  comEA Vibrio campbellii strain DS40M4

40.179

97.391

0.391
  comEA Acinetobacter baumannii strain A118

32.824

100

0.374

Multiple sequence alignment