Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   DZC75_RS21640 Genome accession   NZ_CP031641
Coordinates   4869348..4870835 (+) Length   495 a.a.
NCBI ID   WP_116889758.1    Uniprot ID   A0AAI8KET1
Organism   Pseudomonas parafulva strain JBCS1880     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4864348..4875835
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DZC75_RS21615 (DZC75_21615) - 4864599..4865855 (+) 1257 WP_039581705.1 ATP-grasp domain-containing protein -
  DZC75_RS21620 (DZC75_21620) - 4865852..4867051 (+) 1200 WP_116889754.1 biotin carboxylase -
  DZC75_RS21625 (DZC75_21625) - 4867250..4867876 (+) 627 WP_116889756.1 LysE family translocator -
  DZC75_RS21630 (DZC75_21630) - 4868111..4868851 (-) 741 WP_039581714.1 zeta toxin family protein -
  DZC75_RS21635 (DZC75_21635) - 4868838..4869140 (-) 303 WP_240326927.1 hypothetical protein -
  DZC75_RS21640 (DZC75_21640) comM 4869348..4870835 (+) 1488 WP_116889758.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  DZC75_RS21645 (DZC75_21645) - 4871008..4872792 (+) 1785 WP_116889760.1 monovalent cation:proton antiporter-2 (CPA2) family protein -
  DZC75_RS21650 (DZC75_21650) - 4872837..4873826 (-) 990 WP_039581723.1 sulfate ABC transporter ATP-binding protein -
  DZC75_RS21655 (DZC75_21655) cysW 4873830..4874702 (-) 873 WP_029612536.1 sulfate ABC transporter permease subunit CysW -
  DZC75_RS21660 (DZC75_21660) cysT 4874716..4875534 (-) 819 WP_039581727.1 sulfate ABC transporter permease subunit CysT -

Sequence

Protein


Download         Length: 495 a.a.        Molecular weight: 52853.59 Da        Isoelectric Point: 7.8708

>NTDB_id=309263 DZC75_RS21640 WP_116889758.1 4869348..4870835(+) (comM) [Pseudomonas parafulva strain JBCS1880]
MSLALVHSRAQVGVLAPAVSVETHLANGLPNLTLVGLPEATVKESKDRVRSAIVNSGLEYPARRITQSLAPADLPKDGGR
YDLAIALGILAANGQVPVATLADFECLGELALSGALRPVQGVLPAALAAREAGRALVVPRENAEEASLAGGLVVYAVGHL
QELVAHLNGQVPLPTYAANGLTLRTRPYPDLSEVQGQVAAKRALLVAAAGAHNLLFTGPPGTGKTLLASRLPGLLPPLDE
HEALEVAAIQSVSGKAPLDCWPQRPFRHPHHSASGPALVGGGSRPQPGEITLAHHGVLFLDELPEFERRVLEVLREPLES
GEIVVSRARDRVRFPARFQLVAAMNPCPCGYLGDPAARCRCSPEQIQRYRNKLSGPLLDRIDLHLTVARESTTLSHQASG
EGSASVAAVVAECRERQQRRQGCANAFLTLPGLRQHCALNSADMTWLENACERLNLSLRAAHRLLKVARTLADLEQAERI
ERTHLAEALQYRPGS

Nucleotide


Download         Length: 1488 bp        

>NTDB_id=309263 DZC75_RS21640 WP_116889758.1 4869348..4870835(+) (comM) [Pseudomonas parafulva strain JBCS1880]
ATGTCCCTCGCCCTCGTCCACAGCCGCGCCCAGGTCGGGGTGCTGGCGCCGGCGGTCAGCGTCGAAACCCATCTGGCCAA
CGGCCTGCCCAACCTCACCCTGGTGGGCTTGCCCGAGGCCACGGTCAAGGAAAGCAAGGACCGGGTGCGCAGCGCCATCG
TCAACTCCGGGCTGGAGTATCCCGCGCGGCGCATCACCCAGAGTCTTGCCCCGGCCGATCTGCCCAAGGACGGCGGGCGC
TACGACCTGGCCATCGCCCTGGGCATTCTCGCCGCCAACGGGCAGGTGCCGGTAGCCACCCTGGCCGACTTCGAATGCCT
GGGCGAGTTGGCGCTTTCAGGGGCGCTGCGGCCGGTCCAGGGCGTGTTGCCGGCGGCGCTGGCCGCGCGCGAAGCCGGGC
GGGCGCTGGTGGTGCCGCGTGAGAACGCCGAGGAAGCGAGCCTGGCGGGCGGTCTGGTGGTGTATGCCGTCGGGCATCTG
CAGGAACTGGTCGCGCACCTCAACGGCCAGGTGCCGCTGCCGACCTATGCGGCCAACGGGCTGACCCTGCGCACGCGGCC
CTACCCAGACCTCAGCGAAGTGCAGGGGCAGGTCGCTGCCAAGCGCGCCCTGCTGGTGGCCGCCGCCGGAGCGCACAACC
TGCTGTTCACCGGCCCGCCCGGCACCGGCAAGACGCTTCTGGCCAGTCGCCTGCCCGGTTTGCTGCCGCCCCTGGACGAG
CACGAGGCGCTCGAGGTGGCGGCGATCCAGTCGGTCAGCGGCAAGGCGCCGCTGGACTGCTGGCCGCAAAGACCCTTTCG
CCATCCGCACCACTCGGCGTCCGGCCCGGCGCTAGTGGGCGGAGGCAGCAGGCCACAGCCCGGCGAAATCACCCTGGCCC
ACCATGGGGTGCTGTTTCTCGACGAGTTGCCGGAATTCGAGCGGCGGGTGCTGGAAGTGTTGCGCGAGCCGTTGGAGTCT
GGAGAGATCGTGGTATCGCGGGCCAGAGACCGGGTGCGCTTTCCAGCACGCTTTCAACTGGTGGCAGCGATGAATCCCTG
CCCCTGTGGCTATCTGGGCGACCCGGCAGCGCGCTGTCGTTGCAGCCCGGAACAGATCCAGCGCTACCGCAACAAACTCT
CTGGTCCCCTGCTCGACCGTATCGACCTGCACCTGACCGTGGCGCGCGAGAGCACCACCCTCAGCCACCAGGCCAGCGGC
GAAGGCAGCGCCAGCGTCGCCGCCGTGGTCGCCGAATGCCGCGAACGCCAGCAGCGGCGCCAGGGCTGCGCCAATGCGTT
TCTCACCTTGCCGGGCCTGCGTCAGCACTGTGCATTGAACAGCGCCGACATGACCTGGCTGGAGAACGCTTGCGAACGGC
TCAACCTGTCGCTACGCGCGGCCCACCGGCTGCTCAAGGTGGCGCGAACCCTGGCCGACCTCGAACAGGCCGAGCGTATC
GAACGCACGCACCTGGCCGAGGCTCTGCAGTATCGGCCAGGTAGTTAG

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(190-391)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Vibrio campbellii strain DS40M4

55.758

100

0.558
  comM Vibrio cholerae strain A1552

54.949

100

0.549
  comM Haemophilus influenzae Rd KW20

54.309

100

0.547
  comM Glaesserella parasuis strain SC1401

53.082

100

0.539
  comM Legionella pneumophila str. Paris

49.395

100

0.495
  comM Legionella pneumophila strain ERS1305867

49.395

100

0.495
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

47.809

100

0.485

Multiple sequence alignment