Detailed information NTG0030912

Bioinformatically predicted

Overview

• Name: comB10
• Type: Machinery gene
• Locus tag: HPSH_RS00210
• Genome accession: NC_010698
• Coordinates: 37323..38459 (+)
• Length: 378 a.a.
• NCBI ID: WP_001045866.1
• Uniprot ID: -
• Organism: Helicobacter pylori Shi470
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 32323..43459

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH_RS00175 (HPSH_00170)	panD	32777..33127 (+)	351	WP_000142296.1	aspartate 1-decarboxylase	-
HPSH_RS00180 (HPSH_00175)	-	33138..33440 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPSH_RS00185 (HPSH_00180)	-	33440..34435 (+)	996	WP_000468449.1	PDZ domain-containing protein	-
HPSH_RS00190 (HPSH_00185)	comB6	34441..35496 (+)	1056	WP_000786693.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSH_RS00195 (HPSH_00190)	comB7	35512..35625 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HPSH_RS00200 (HPSH_00195)	comB8	35622..36365 (+)	744	WP_000660503.1	type IV secretion system protein	Machinery gene
HPSH_RS00205 (HPSH_00200)	comB9	36365..37330 (+)	966	WP_012443264.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSH_RS00210 (HPSH_00205)	comB10	37323..38459 (+)	1137	WP_001045866.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSH_RS00215 (HPSH_00210)	-	38530..39942 (+)	1413	WP_000694833.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-
HPSH_RS00220 (HPSH_00215)	gmd	39970..41115 (+)	1146	WP_000659858.1	GDP-mannose 4,6-dehydratase	-
HPSH_RS00225 (HPSH_00220)	-	41108..42040 (+)	933	WP_001002427.1	GDP-L-fucose synthase family protein	-
HPSH_RS00230 (HPSH_00230)	hypE	42325..43323 (-)	999	WP_000378800.1	hydrogenase expression/formation protein HypE	-

Sequence

Protein

• Length: 378 a.a.
• Molecular weight: 42243.92 Da
• Isoelectric Point: 9.9555

>NTDB_id=30912 HPSH_RS00210 WP_001045866.1 37323..38459(+) (comB10) [Helicobacter pylori Shi470]
MNKWLKGALVFVGGFATIITISLIYHQKPKAPLNNQPNLLNDDEVKYPLQDYTFTQNPQPTNTESSKDATIKALQEQLKA
ALKALNSKEMNSSKEETFKNPPIDLKTNTTPPKKDFSLKQLDLLAARITPFKQSPKNYEENLIFPMDNPKGIDGFTNLKE
KDIATNENKLLRTITADKMIPAFLITPISSQIAGKVIAQVESDIFAHMGKAVLIPKGSKVIGYYSNNNKMGEYRLDIVWS
RIITPHGINIMLTNAKGADIKGYNGLVGELIERNFQRYGVPLLLSTLTNGLLIGITSALNNRGNKEYATNFFGDYLLLQL
MRQSGMGINQVVNQILRDKSKIAPIVVIREGSRVFISPNTDIFFPIPKENEVIAEFLK

Nucleotide

• Length: 1137 bp

>NTDB_id=30912 HPSH_RS00210 WP_001045866.1 37323..38459(+) (comB10) [Helicobacter pylori Shi470]
ATGAATAAGTGGCTTAAGGGGGCACTTGTTTTTGTAGGGGGTTTTGCAACGATCATAACAATTTCTTTAATCTATCATCA
AAAGCCAAAAGCCCCCCTAAATAACCAGCCCAACCTTTTGAATGACGATGAGGTGAAATACCCCTTACAAGACTACACTT
TCACTCAAAACCCACAGCCAACTAACACAGAAAGCTCCAAAGACGCTACCATTAAAGCCTTACAAGAACAGCTAAAAGCC
GCTTTAAAAGCCCTAAACTCCAAAGAAATGAACTCTTCTAAAGAAGAAACTTTTAAGAACCCTCCCATAGATTTAAAAAC
AAACACAACCCCTCCTAAAAAAGACTTTTCTCTAAAGCAATTAGATTTACTGGCCGCTCGCATCACCCCTTTCAAACAAA
GCCCTAAAAATTATGAAGAAAACCTGATTTTCCCTATGGATAACCCTAAAGGCATTGATGGTTTTACCAACCTTAAAGAA
AAAGACATCGCCACCAATGAAAACAAGCTTTTACGCACCATTACAGCCGATAAAATGATACCCGCCTTTTTGATCACGCC
TATTTCTAGCCAGATCGCTGGTAAAGTCATCGCGCAAGTGGAGAGCGATATTTTTGCTCACATGGGCAAGGCCGTCTTAA
TCCCCAAAGGCTCTAAAGTCATAGGCTATTACAGCAACAATAACAAAATGGGCGAATACCGCTTGGATATTGTATGGAGC
CGCATCATCACCCCCCATGGCATCAATATCATGCTCACTAACGCTAAAGGGGCGGACATTAAAGGCTATAACGGCTTAGT
GGGGGAATTGATTGAAAGGAATTTCCAGCGCTATGGCGTGCCGTTACTGCTTTCTACTCTCACTAACGGCTTGTTGATTG
GGATCACTTCGGCTTTAAACAACAGGGGCAATAAAGAATATGCGACTAATTTCTTTGGGGATTACCTTTTATTGCAATTG
ATGAGGCAAAGCGGCATGGGGATCAATCAAGTGGTCAATCAAATTTTAAGAGACAAGAGCAAAATCGCTCCTATTGTGGT
GATTAGAGAAGGGAGTAGGGTCTTCATTTCGCCCAATACTGACATCTTCTTTCCTATACCAAAAGAGAATGAAGTCATCG
CTGAGTTTTTGAAGTAA

Domains

Predicted by InterproScan.

• Bacterial conjugation TrbI-like protein (TrbI) (173-364)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB10	Helicobacter pylori P1	96.032	100	0.96