Detailed information
Bioinformatically predicted
Overview
| Name | comB7 | Type | Machinery gene |
| Locus tag | HPSH_RS00195 | Genome accession | NC_010698 |
| Coordinates | 35512..35625 (+) | Length | 37 a.a. |
| NCBI ID | WP_001218100.1 | Uniprot ID | - |
| Organism | Helicobacter pylori Shi470 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 30512..40625
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPSH_RS00170 (HPSH_00165) | - | 30565..32787 (+) | 2223 | WP_001051542.1 | AAA family ATPase | - |
| HPSH_RS00175 (HPSH_00170) | panD | 32777..33127 (+) | 351 | WP_000142296.1 | aspartate 1-decarboxylase | - |
| HPSH_RS00180 (HPSH_00175) | - | 33138..33440 (+) | 303 | WP_000347918.1 | YbaB/EbfC family nucleoid-associated protein | - |
| HPSH_RS00185 (HPSH_00180) | - | 33440..34435 (+) | 996 | WP_000468449.1 | PDZ domain-containing protein | - |
| HPSH_RS00190 (HPSH_00185) | comB6 | 34441..35496 (+) | 1056 | WP_000786693.1 | P-type conjugative transfer protein TrbL | Machinery gene |
| HPSH_RS00195 (HPSH_00190) | comB7 | 35512..35625 (+) | 114 | WP_001218100.1 | hypothetical protein | Machinery gene |
| HPSH_RS00200 (HPSH_00195) | comB8 | 35622..36365 (+) | 744 | WP_000660503.1 | type IV secretion system protein | Machinery gene |
| HPSH_RS00205 (HPSH_00200) | comB9 | 36365..37330 (+) | 966 | WP_012443264.1 | TrbG/VirB9 family P-type conjugative transfer protein | Machinery gene |
| HPSH_RS00210 (HPSH_00205) | comB10 | 37323..38459 (+) | 1137 | WP_001045866.1 | DNA type IV secretion system protein ComB10 | Machinery gene |
| HPSH_RS00215 (HPSH_00210) | - | 38530..39942 (+) | 1413 | WP_000694833.1 | mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase | - |
Sequence
Protein
Download Length: 37 a.a. Molecular weight: 4263.19 Da Isoelectric Point: 9.3572
>NTDB_id=30909 HPSH_RS00195 WP_001218100.1 35512..35625(+) (comB7) [Helicobacter pylori Shi470]
MRIFSVIMGIMLFGCTSKVHEMKKSPCTLYENRLNLA
MRIFSVIMGIMLFGCTSKVHEMKKSPCTLYENRLNLA
Nucleotide
Download Length: 114 bp
>NTDB_id=30909 HPSH_RS00195 WP_001218100.1 35512..35625(+) (comB7) [Helicobacter pylori Shi470]
ATGAGAATTTTTTCTGTCATTATGGGAATCATGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTGAATCTTGCATGA
ATGAGAATTTTTTCTGTCATTATGGGAATCATGTTGTTTGGTTGCACCAGTAAGGTGCATGAGATGAAAAAAAGCCCTTG
CACATTGTATGAAAACAGGTTGAATCTTGCATGA
Domains
No domain identified.
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB7 | Helicobacter pylori P1 |
89.189 |
100 |
0.892 |