Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB9   Type   Machinery gene
Locus tag   HPSH_RS00205 Genome accession   NC_010698
Coordinates   36365..37330 (+) Length   321 a.a.
NCBI ID   WP_012443264.1    Uniprot ID   -
Organism   Helicobacter pylori Shi470     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 31365..42330
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPSH_RS00175 (HPSH_00170) panD 32777..33127 (+) 351 WP_000142296.1 aspartate 1-decarboxylase -
  HPSH_RS00180 (HPSH_00175) - 33138..33440 (+) 303 WP_000347918.1 YbaB/EbfC family nucleoid-associated protein -
  HPSH_RS00185 (HPSH_00180) - 33440..34435 (+) 996 WP_000468449.1 PDZ domain-containing protein -
  HPSH_RS00190 (HPSH_00185) comB6 34441..35496 (+) 1056 WP_000786693.1 P-type conjugative transfer protein TrbL Machinery gene
  HPSH_RS00195 (HPSH_00190) comB7 35512..35625 (+) 114 WP_001218100.1 hypothetical protein Machinery gene
  HPSH_RS00200 (HPSH_00195) comB8 35622..36365 (+) 744 WP_000660503.1 type IV secretion system protein Machinery gene
  HPSH_RS00205 (HPSH_00200) comB9 36365..37330 (+) 966 WP_012443264.1 TrbG/VirB9 family P-type conjugative transfer protein Machinery gene
  HPSH_RS00210 (HPSH_00205) comB10 37323..38459 (+) 1137 WP_001045866.1 DNA type IV secretion system protein ComB10 Machinery gene
  HPSH_RS00215 (HPSH_00210) - 38530..39942 (+) 1413 WP_000694833.1 mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase -
  HPSH_RS00220 (HPSH_00215) gmd 39970..41115 (+) 1146 WP_000659858.1 GDP-mannose 4,6-dehydratase -
  HPSH_RS00225 (HPSH_00220) - 41108..42040 (+) 933 WP_001002427.1 GDP-L-fucose synthase family protein -

Sequence

Protein


Download         Length: 321 a.a.        Molecular weight: 36973.47 Da        Isoelectric Point: 9.3498

>NTDB_id=30911 HPSH_RS00205 WP_012443264.1 36365..37330(+) (comB9) [Helicobacter pylori Shi470]
MRKVLYALVGFLLAFSALRADDFLEEANETAPANLNHPMQDLNAIQGSFFDKNRSKMSNTLNIDYFQGQTYKIRLRYAMA
TLLFFSKPISDFVLGDKVGFDAKILESNDRILLIKPLQIGVDSNVSVIDNEGKIFSFYVFSTTFTSSKHPNLQVFIEDKN
YYSNAFMKPQNKENTLENTPTNNNKPLKEEKEETKEEETITIGDNTNAMKIVKKDIQKGYRALKSSQRKWYCLGICSKKS
KLSLMPEEIFNDKQFTYFKFDKKLALSKFPVIYKVVDGYDNPVNTRIVGDYIIAEDVSAKWTLRLGKDYLCIRFIKKGKD
E

Nucleotide


Download         Length: 966 bp        

>NTDB_id=30911 HPSH_RS00205 WP_012443264.1 36365..37330(+) (comB9) [Helicobacter pylori Shi470]
ATGCGTAAGGTTTTATACGCTCTTGTGGGCTTTTTGTTGGCTTTTAGCGCTTTAAGAGCCGATGATTTTTTAGAAGAAGC
TAACGAAACAGCCCCGGCGAATTTAAACCACCCCATGCAAGATTTAAACGCCATTCAAGGGAGCTTTTTTGACAAGAACC
GCTCAAAAATGTCCAACACTTTGAACATTGATTACTTTCAAGGGCAAACCTATAAAATCCGCTTGCGTTATGCGATGGCG
ACCTTATTATTTTTTTCAAAACCCATTAGCGATTTTGTTTTAGGGGATAAGGTGGGCTTTGATGCGAAAATCTTAGAAAG
TAACGATCGCATTTTGCTCATCAAACCCCTACAAATTGGCGTGGATTCTAATGTCAGCGTGATTGATAATGAGGGTAAGA
TTTTTTCTTTCTATGTGTTTTCTACCACTTTCACTAGCTCCAAACACCCTAATTTACAGGTTTTCATAGAAGATAAAAAT
TATTATTCAAACGCTTTTATGAAGCCACAAAACAAAGAAAATACCCTTGAAAATACCCCCACAAACAACAACAAACCCTT
AAAAGAAGAAAAAGAAGAAACCAAAGAAGAAGAGACTATAACGATTGGCGATAACACGAATGCAATGAAAATCGTTAAAA
AAGACATTCAAAAAGGCTATAGGGCTTTAAAAAGCTCTCAAAGGAAATGGTATTGTTTAGGGATTTGTTCTAAAAAATCC
AAACTCTCTTTGATGCCTGAAGAAATTTTTAACGACAAGCAATTCACTTATTTCAAATTTGACAAAAAATTAGCGCTCTC
TAAATTCCCGGTGATTTATAAAGTCGTTGATGGCTATGATAACCCGGTGAATACTAGGATTGTGGGCGATTACATTATCG
CTGAAGATGTCTCGGCTAAATGGACTTTAAGGCTGGGTAAGGACTATTTGTGTATCCGTTTTATCAAAAAGGGTAAAGAT
GAATAA

Domains

Predicted by InterproScan.

Conjugal transfer protein (CagX)

(62-312)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB9 Helicobacter pylori P1

92.966

100

0.947

Multiple sequence alignment