Detailed information NTG0030908

Bioinformatically predicted

Overview

• Name: comB6
• Type: Machinery gene
• Locus tag: HPSH_RS00190
• Genome accession: NC_010698
• Coordinates: 34441..35496 (+)
• Length: 351 a.a.
• NCBI ID: WP_000786693.1
• Uniprot ID: -
• Organism: Helicobacter pylori Shi470
• Function: transformation-associated type IV transport system (predicted from homology) DNA binding and uptake

Genomic Context

Location: 29441..40496

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HPSH_RS00160 (HPSH_00155)	-	29869..30282 (+)	414	WP_001023013.1	universal stress protein	-
HPSH_RS00165 (HPSH_00160)	-	30290..30565 (+)	276	WP_000784914.1	ATP-dependent Clp protease adaptor ClpS	-
HPSH_RS00170 (HPSH_00165)	-	30565..32787 (+)	2223	WP_001051542.1	AAA family ATPase	-
HPSH_RS00175 (HPSH_00170)	panD	32777..33127 (+)	351	WP_000142296.1	aspartate 1-decarboxylase	-
HPSH_RS00180 (HPSH_00175)	-	33138..33440 (+)	303	WP_000347918.1	YbaB/EbfC family nucleoid-associated protein	-
HPSH_RS00185 (HPSH_00180)	-	33440..34435 (+)	996	WP_000468449.1	PDZ domain-containing protein	-
HPSH_RS00190 (HPSH_00185)	comB6	34441..35496 (+)	1056	WP_000786693.1	P-type conjugative transfer protein TrbL	Machinery gene
HPSH_RS00195 (HPSH_00190)	comB7	35512..35625 (+)	114	WP_001218100.1	hypothetical protein	Machinery gene
HPSH_RS00200 (HPSH_00195)	comB8	35622..36365 (+)	744	WP_000660503.1	type IV secretion system protein	Machinery gene
HPSH_RS00205 (HPSH_00200)	comB9	36365..37330 (+)	966	WP_012443264.1	TrbG/VirB9 family P-type conjugative transfer protein	Machinery gene
HPSH_RS00210 (HPSH_00205)	comB10	37323..38459 (+)	1137	WP_001045866.1	DNA type IV secretion system protein ComB10	Machinery gene
HPSH_RS00215 (HPSH_00210)	-	38530..39942 (+)	1413	WP_000694833.1	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	-

Sequence

Protein

• Length: 351 a.a.
• Molecular weight: 39767.72 Da
• Isoelectric Point: 9.0413

>NTDB_id=30908 HPSH_RS00190 WP_000786693.1 34441..35496(+) (comB6) [Helicobacter pylori Shi470]
MKNDAYEIILSWFITPLTAILGRFAEFFLYTLHAQLVFNSVVALAFMLFAYRSLKEQNFFSTSALTEALLFVGFFALFNY
ALKNPMRFYEFFQNAIFIAPNMIAQSLSQSLSNFSNHALSLDFIFNHGFYALSFISDLSHNEMSVWLFLSILQGLFLSVL
FAIIILVYLEVHVWCSLGVLFLAFGFFKTWRSVVVACLKKCFALGFYKPFLLLVGFLNVSVTKALIDAHMQEKQDLSLLL
VVALFLCCVFIIGVPFFINALFRVQNSFKETYKLATNLSANLSQNALNSLQYITTPPASSSVSSSMSGSVSKEKETHSPT
FKVETTQLDVKIPNFKQKKVKKDTINTKNEI

Nucleotide

• Length: 1056 bp

>NTDB_id=30908 HPSH_RS00190 WP_000786693.1 34441..35496(+) (comB6) [Helicobacter pylori Shi470]
ATGAAAAATGACGCTTATGAGATTATCCTTTCTTGGTTTATCACGCCTCTCACGGCGATTTTAGGGCGTTTCGCTGAATT
TTTTCTCTACACCTTGCATGCGCAATTGGTGTTTAATAGCGTGGTCGCTTTGGCGTTCATGCTCTTTGCTTATAGGAGTT
TGAAAGAACAGAATTTCTTCAGCACTAGCGCGCTAACAGAAGCGTTATTGTTTGTGGGGTTTTTTGCGCTTTTTAACTAC
GCTTTAAAAAATCCCATGCGTTTTTATGAATTTTTCCAAAACGCTATTTTTATTGCGCCTAATATGATCGCGCAAAGCCT
CTCTCAAAGCTTGAGCAACTTTTCTAACCACGCGCTTTCTTTAGATTTTATCTTTAATCATGGTTTTTATGCCCTTAGTT
TTATCAGCGATTTGAGCCATAATGAAATGTCTGTGTGGCTTTTTTTAAGCATTTTGCAAGGGCTTTTTTTGAGCGTGCTG
TTTGCGATCATCATTTTAGTGTATTTAGAAGTGCATGTGTGGTGTTCTTTAGGGGTGCTGTTTTTAGCGTTTGGGTTTTT
TAAAACCTGGAGGAGCGTTGTGGTTGCATGCCTAAAAAAATGCTTCGCTCTTGGGTTTTACAAGCCTTTTTTGTTGTTGG
TGGGGTTTTTGAACGTGTCGGTTACTAAGGCTTTAATAGACGCTCATATGCAAGAAAAACAAGACTTAAGCCTTTTATTG
GTGGTGGCGTTATTTTTGTGTTGTGTTTTTATCATAGGCGTGCCTTTTTTCATCAACGCTTTGTTTAGGGTGCAAAACAG
CTTTAAAGAAACTTACAAACTCGCTACCAATTTGAGCGCCAACCTCAGCCAAAACGCCCTTAATTCCTTACAATATATCA
CGACCCCACCCGCTTCTTCTAGCGTTTCTTCTTCTATGAGCGGAAGCGTCTCTAAAGAAAAAGAAACGCATTCCCCCACA
TTCAAGGTAGAAACCACTCAATTAGATGTAAAAATCCCAAATTTCAAGCAAAAAAAGGTTAAAAAGGATACAATAAATAC
AAAAAATGAAATTTAA

Domains

Predicted by InterproScan.

• TrbL/VirB6 plasmid conjugal transfer protein (TrbL) (44-254)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comB6	Helicobacter pylori 26695	98.006	100	0.98