Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   ETA_RS16620 Genome accession   NC_010694
Coordinates   3456855..3457403 (-) Length   182 a.a.
NCBI ID   WP_012442781.1    Uniprot ID   B2VKC4
Organism   Erwinia tasmaniensis Et1/99     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3451855..3462403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA_RS16615 (ETA_30840) - 3454583..3456268 (-) 1686 WP_083772866.1 ShlB/FhaC/HecB family hemolysin secretion/activation protein -
  ETA_RS16620 (ETA_30850) ssb 3456855..3457403 (-) 549 WP_012442781.1 single-stranded DNA-binding protein Machinery gene
  ETA_RS16625 (ETA_30860) uvrA 3457655..3460483 (+) 2829 WP_012442782.1 excinuclease ABC subunit UvrA -
  ETA_RS16630 - 3460523..3460711 (-) 189 WP_042959178.1 hypothetical protein -
  ETA_RS16635 (ETA_30870) - 3460765..3461817 (+) 1053 WP_012442783.1 NAD(P)-dependent alcohol dehydrogenase -

Sequence

Protein


Download         Length: 182 a.a.        Molecular weight: 19471.40 Da        Isoelectric Point: 5.2456

>NTDB_id=30901 ETA_RS16620 WP_012442781.1 3456855..3457403(-) (ssb) [Erwinia tasmaniensis Et1/99]
MASRGVNKVILVGNLGQDPEVRYMPNGGAVANITLATSESWRDKQTGETKEKTEWHRVVLFGKLAEVAGEYLRKGSQVYI
EGALQTRKWTDQAGVEKYTTEVVVNVGGTMQMLGGRSQGGGASAGGQNGGSNNGWGQPQQPQGGNQFSGGAQQQARPQQQ
PQQNNAPANNEPPIDFDDDIPF

Nucleotide


Download         Length: 549 bp        

>NTDB_id=30901 ETA_RS16620 WP_012442781.1 3456855..3457403(-) (ssb) [Erwinia tasmaniensis Et1/99]
ATGGCCAGCAGAGGCGTTAACAAAGTAATTTTAGTCGGAAATCTGGGTCAGGATCCGGAAGTCCGCTACATGCCGAATGG
CGGCGCCGTTGCCAACATCACTCTGGCCACATCCGAAAGCTGGCGTGACAAGCAGACCGGCGAAACCAAAGAGAAAACCG
AGTGGCACCGCGTCGTCCTGTTCGGCAAACTGGCCGAGGTGGCTGGTGAGTATCTGCGTAAAGGCTCTCAGGTTTATATC
GAAGGCGCTTTGCAGACGCGTAAATGGACAGACCAGGCCGGTGTAGAGAAATACACCACCGAAGTTGTGGTCAACGTGGG
CGGCACTATGCAGATGCTGGGCGGACGTTCACAGGGCGGCGGCGCATCGGCCGGTGGTCAGAACGGCGGCAGCAATAACG
GCTGGGGTCAGCCACAGCAGCCGCAGGGCGGCAATCAGTTTAGCGGCGGCGCGCAGCAGCAGGCACGTCCGCAGCAGCAG
CCACAGCAGAACAACGCACCGGCTAATAATGAACCGCCGATCGACTTTGACGACGATATTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(6-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2VKC4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Vibrio cholerae strain A1552

70.811

100

0.72
  ssb Glaesserella parasuis strain SC1401

54.545

100

0.56
  ssb Neisseria meningitidis MC58

44.751

99.451

0.445
  ssb Neisseria gonorrhoeae MS11

44.751

99.451

0.445
  ssbA Bacillus subtilis subsp. subtilis str. 168

37.079

97.802

0.363

Multiple sequence alignment