Detailed information NTG0030861

Bioinformatically predicted

Overview

• Name: radC
• Type: Machinery gene
• Locus tag: NT05HA_RS10440
• Genome accession: NC_012913
• Coordinates: 2193266..2193925 (+)
• Length: 219 a.a.
• NCBI ID: WP_005704497.1
• Uniprot ID: -
• Organism: Aggregatibacter aphrophilus NJ8700
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2188266..2198925

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NT05HA_RS10410 (NT05HA_2240)	gorA	2188371..2189741 (+)	1371	WP_005701807.1	glutathione-disulfide reductase	-
NT05HA_RS10415 (NT05HA_2241)	crp	2189862..2190506 (-)	645	WP_005701806.1	cAMP-activated global transcriptional regulator CRP	Regulator
NT05HA_RS10420 (NT05HA_2242)	-	2190544..2190762 (-)	219	WP_005701805.1	YheU family protein	-
NT05HA_RS10425 (NT05HA_2243)	slmA	2190786..2191385 (-)	600	WP_005701804.1	nucleoid occlusion factor SlmA	-
NT05HA_RS10430 (NT05HA_2244)	dut	2191385..2191840 (-)	456	WP_005701802.1	dUTP diphosphatase	-
NT05HA_RS10435 (NT05HA_2245)	coaBC	2191889..2193088 (-)	1200	WP_012771967.1	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	-
NT05HA_RS10440 (NT05HA_2246)	radC	2193266..2193925 (+)	660	WP_005704497.1	RadC family protein	Machinery gene
NT05HA_RS10445 (NT05HA_2247)	rpmB	2194136..2194372 (+)	237	WP_005542826.1	50S ribosomal protein L28	-
NT05HA_RS10450 (NT05HA_2248)	rpmG	2194384..2194554 (+)	171	WP_005544948.1	50S ribosomal protein L33	-
NT05HA_RS10455 (NT05HA_2249)	mutM	2194624..2195439 (+)	816	WP_005701798.1	DNA-formamidopyrimidine glycosylase	-
NT05HA_RS10460 (NT05HA_2250)	-	2195436..2196497 (-)	1062	WP_005701796.1	glycosyltransferase family 9 protein	-
NT05HA_RS10465 (NT05HA_2251)	-	2196502..2197530 (-)	1029	WP_005701795.1	glycosyltransferase family 9 protein	-
NT05HA_RS10470 (NT05HA_2252)	-	2197527..2198213 (-)	687	WP_005701794.1	glycosyltransferase family 25 protein	-
NT05HA_RS10475 (NT05HA_2253)	rpmE	2198274..2198486 (-)	213	WP_005701793.1	50S ribosomal protein L31	-

Sequence

Protein

• Length: 219 a.a.
• Molecular weight: 24771.82 Da
• Isoelectric Point: 6.3764

>NTDB_id=30861 NT05HA_RS10440 WP_005704497.1 2193266..2193925(+) (radC) [Aggregatibacter aphrophilus NJ8700]
MNEPLMPREKLLQYGAAALSDEELLAIFLRTGIKDCPVMQLSHNVLQHFGSLRGLITASQKQFCAVKGIGVTQFIQLQAC
TEMTRRYLLAELKEEHCFTSSDAVKMYLQTELEGLEREVFLVLFLDTQHRLIKQENLFLGTINQAMVYPREIIKEALACN
AAALILAHNHPSGVAEPSFSDRNITQKIKQAAELMEIRVLDHFVIGRGCYFSFAEQNLL

Nucleotide

• Length: 660 bp

>NTDB_id=30861 NT05HA_RS10440 WP_005704497.1 2193266..2193925(+) (radC) [Aggregatibacter aphrophilus NJ8700]
ATGAATGAACCATTAATGCCAAGAGAAAAATTGTTACAATACGGCGCGGCGGCGTTAAGCGATGAGGAGCTATTGGCCAT
TTTTTTACGTACGGGCATTAAGGATTGCCCCGTCATGCAATTGTCCCACAATGTGTTGCAACATTTTGGCTCTTTACGCG
GCTTAATTACGGCAAGTCAAAAGCAATTTTGTGCCGTAAAAGGCATTGGTGTTACCCAGTTTATTCAGTTACAGGCTTGT
ACCGAAATGACTAGGCGTTATTTGCTGGCGGAATTAAAGGAAGAACATTGTTTCACTTCAAGTGATGCGGTGAAAATGTA
TTTGCAAACCGAGCTGGAGGGTTTGGAACGAGAAGTCTTTTTAGTGTTGTTTTTGGATACGCAACATCGTTTAATCAAGC
AGGAAAACCTTTTCCTTGGCACCATCAATCAGGCCATGGTGTATCCGCGGGAGATCATTAAAGAAGCCTTAGCCTGCAAT
GCAGCGGCGCTTATTTTGGCGCATAATCATCCTTCAGGTGTGGCTGAACCGAGCTTTTCCGATCGAAATATTACACAAAA
AATCAAGCAGGCGGCTGAGTTAATGGAGATTCGGGTATTGGATCATTTTGTGATTGGTCGCGGCTGTTATTTTTCCTTTG
CGGAACAAAATCTTCTCTAA

Domains

Predicted by InterProScan.

• RadC-like JAB domain (RadC) (98-217)

• UPF0758 N-terminal (UPF0758_N) (6-73)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
radC	Haemophilus influenzae Rd KW20	67.431	99.543	0.671
ysxA/radC	Bacillus subtilis subsp. subtilis str. 168	38.889	98.63	0.384
radC	Streptococcus gordonii str. Challis substr. CH1	37.788	99.087	0.374
radC	Streptococcus pneumoniae TIGR4	37.85	97.717	0.37
radC	Streptococcus pneumoniae R6	37.383	97.717	0.365
radC	Streptococcus pneumoniae D39	37.383	97.717	0.365