Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   SBBS512_RS23230 Genome accession   NC_010658
Coordinates   3878949..3880469 (+) Length   506 a.a.
NCBI ID   WP_000058942.1    Uniprot ID   B2TU24
Organism   Shigella boydii CDC 3083-94     
Function   require for natural transformation (predicted from homology)   
Unclear

Genomic Context

Location: 3873949..3885469
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SBBS512_RS23210 (SbBS512_E4150) ilvE 3875506..3876435 (-) 930 WP_000208520.1 branched-chain-amino-acid transaminase -
  SBBS512_RS23215 (SbBS512_E4151) ilvM 3876455..3876718 (-) 264 WP_000983255.1 acetolactate synthase 2 small subunit -
  SBBS512_RS23220 (SbBS512_E4152) ilvG 3876715..3878361 (-) 1647 WP_001012626.1 acetolactate synthase 2 catalytic subunit -
  SBBS512_RS33360 ilvX 3878364..3878414 (-) 51 WP_113771618.1 peptide IlvX -
  SBBS512_RS23225 ilvL 3878500..3878598 (-) 99 WP_001311244.1 ilv operon leader peptide -
  SBBS512_RS23230 (SbBS512_E4153) comM 3878949..3880469 (+) 1521 WP_000058942.1 YifB family Mg chelatase-like AAA ATPase Machinery gene
  SBBS512_RS23235 (SbBS512_E4154) maoP 3880494..3880832 (-) 339 WP_000841001.1 macrodomain Ori organization protein MaoP -
  SBBS512_RS23240 (SbBS512_E4155) hdfR 3880951..3881790 (+) 840 WP_000379225.1 HTH-type transcriptional regulator HdfR -

Sequence

Protein


Download         Length: 506 a.a.        Molecular weight: 55433.70 Da        Isoelectric Point: 8.1909

>NTDB_id=30848 SBBS512_RS23230 WP_000058942.1 3878949..3880469(+) (comM) [Shigella boydii CDC 3083-94]
MSLSIVHTRAALGVNAPPITVEVHISKGLPGLTKVGLPETTVKEARDRVRSAIINSGYEYPAKKITINLAPADLPKEGGR
YDLPIAIALLAASEQLTANKLDEYGLVGELALTGALRGVPGAISSTTEAIKSGRKIIVAKDNEDEVELINGEGCLIADHL
QAVCAFLEGKHALERPKPTDAVSRALQHDLSDVIGQEQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNE
EALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGRGEISLAHNGVLFLDELPEFERRTLDALREPIES
GQIHLSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPRILSKAVVPG
ESSATVKQRVMAARERQFKRQNKLNAWLDSPEIRQFCKLESEDAMWLEETLIHLGLSIRAWQRLLKVARTIADIDQFDII
TRQHLQEAVSYRAIDRLLIHLQKLLT

Nucleotide


Download         Length: 1521 bp        

>NTDB_id=30848 SBBS512_RS23230 WP_000058942.1 3878949..3880469(+) (comM) [Shigella boydii CDC 3083-94]
ATGTCACTGTCAATTGTTCATACCCGCGCAGCCCTGGGAGTAAATGCGCCCCCGATCACTGTTGAGGTACATATCAGTAA
AGGTCTACCCGGCTTAACGAAGGTGGGCTTACCAGAAACAACGGTAAAAGAAGCTCGCGATCGCGTGCGCAGCGCCATTA
TCAATAGCGGATATGAATATCCGGCGAAAAAAATCACCATCAACCTGGCTCCAGCTGATCTGCCAAAAGAAGGGGGACGA
TATGATTTACCTATCGCCATTGCGTTGCTGGCGGCCTCAGAACAGCTTACAGCCAATAAGTTAGATGAATATGGATTAGT
CGGAGAACTGGCGCTTACAGGCGCTCTGCGTGGCGTTCCCGGCGCAATCTCCAGTACAACTGAAGCTATTAAGTCGGGCA
GAAAAATTATCGTCGCGAAAGATAACGAAGATGAAGTGGAGCTAATTAACGGTGAAGGATGCCTGATAGCCGATCATCTG
CAAGCTGTCTGTGCGTTTCTGGAAGGTAAGCACGCTCTCGAACGCCCGAAACCAACTGATGCAGTATCCCGGGCGCTACA
ACATGATCTCAGTGATGTTATCGGTCAGGAACAAGGAAAGCGAGGGCTGGAAATTACCGCCGCTGGCGGGCACAACCTTT
TACTGATTGGGCCGCCGGGAACAGGTAAAACAATGCTCGCCAGCCGTATTAATGGCCTGTTACCAGATTTAAGCAATGAA
GAGGCACTGGAGAGTGCTGCGATATTAAGTCTGGTAAATGCTGAATCAGTACAAAAACAATGGCGGCAGCGCCCGTTCCG
CTCACCTCATCACAGTGCATCGTTAACTGCGATGGTAGGCGGTGGCGCAATTCCAGGGCGCGGTGAAATTTCGCTGGCGC
ATAACGGCGTGCTTTTTCTTGATGAGTTACCTGAATTTGAAAGGCGTACACTGGATGCCTTGCGAGAGCCGATTGAATCC
GGGCAGATCCATCTTTCACGCACGCGAGCAAAAATAACCTATCCAGCCCGTTTCCAGCTTGTCGCGGCGATGAATCCCAG
CCCTACCGGACATTATCAGGGAAACCATAACCGCTGCACACCAGAGCAAACGCTGCGTTATCTCAACCGACTCTCTGGTC
CCTTTCTCGACCGCTTCGATCTCTCACTGGAGATCCCATTACCGCCTCCCCGTATTTTGAGTAAAGCGGTAGTGCCGGGA
GAAAGCAGCGCCACCGTTAAACAACGCGTAATGGCCGCCAGAGAGCGCCAATTTAAGCGGCAGAATAAACTGAACGCCTG
GCTGGATAGTCCGGAAATACGCCAATTCTGCAAACTTGAGAGCGAAGATGCGATGTGGCTGGAAGAAACGCTGATCCATC
TGGGGTTATCGATTCGTGCCTGGCAGCGGTTATTGAAAGTTGCACGAACCATTGCTGATATTGATCAGTTTGACATTATC
ACACGTCAACATTTGCAGGAGGCAGTTAGCTATCGAGCGATTGACCGTTTGCTCATCCATCTGCAGAAACTACTGACATA
A

Domains

Predicted by InterproScan.

Magnesium chelatase, subunit ChlI C-terminal (Mg_chelatase_C)

(400-492)

Subunit ChlI of Mg-chelatase (ChlI)

(21-142)

Magnesium chelatase, subunit ChlI (Mg_chelatase)

(189-386)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2TU24

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Haemophilus influenzae Rd KW20

58.121

100

0.587
  comM Vibrio cholerae strain A1552

58.765

99.209

0.583
  comM Glaesserella parasuis strain SC1401

57.988

100

0.581
  comM Vibrio campbellii strain DS40M4

57.371

99.209

0.569
  comM Legionella pneumophila str. Paris

47.39

98.419

0.466
  comM Legionella pneumophila strain ERS1305867

47.39

98.419

0.466
  RA0C_RS07335 Riemerella anatipestifer ATCC 11845 = DSM 15868

43.874

100

0.439

Multiple sequence alignment