Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   NPUN_RS30170 Genome accession   NC_010628
Coordinates   7359478..7359843 (+) Length   121 a.a.
NCBI ID   WP_012412195.1    Uniprot ID   A0A9Q5ZEW0
Organism   Nostoc punctiforme PCC 73102     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 7354478..7364843
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NPUN_RS30155 (Npun_F5958) tilS 7354842..7355837 (+) 996 WP_012412192.1 tRNA lysidine(34) synthetase TilS -
  NPUN_RS30160 (Npun_R5959) hmpF 7355898..7357658 (-) 1761 WP_012412193.1 pilus motility taxis protein HmpF -
  NPUN_RS30165 (Npun_F5960) - 7358068..7359264 (+) 1197 WP_012412194.1 response regulator -
  NPUN_RS30170 (Npun_F5961) pilH 7359478..7359843 (+) 366 WP_012412195.1 response regulator transcription factor Machinery gene
  NPUN_RS30175 (Npun_F5962) - 7359857..7360387 (+) 531 WP_012412196.1 chemotaxis protein CheW -
  NPUN_RS30180 (Npun_F5963) - 7360402..7363335 (+) 2934 WP_041566498.1 methyl-accepting chemotaxis protein -

Sequence

Protein


Download         Length: 121 a.a.        Molecular weight: 13336.50 Da        Isoelectric Point: 4.8604

>NTDB_id=30796 NPUN_RS30170 WP_012412195.1 7359478..7359843(+) (pilH) [Nostoc punctiforme PCC 73102]
MSTVLIVEDSIAQREMITDLLKATGLTVTHASDGLEALEAIQVAPPDLVVLDIVMPRMNGYEVCRRLKSDPKTQNVPVVM
CSSKGEEFDRYWGMKQGADAYIAKPFQPTELVGTVKQLLRG

Nucleotide


Download         Length: 366 bp        

>NTDB_id=30796 NPUN_RS30170 WP_012412195.1 7359478..7359843(+) (pilH) [Nostoc punctiforme PCC 73102]
ATGAGTACAGTTCTGATTGTGGAAGACAGTATCGCGCAAAGGGAGATGATTACAGACCTCCTGAAAGCAACTGGCCTAAC
AGTTACCCATGCCAGTGATGGATTAGAAGCATTGGAGGCAATCCAAGTAGCACCTCCCGATTTAGTGGTGTTGGATATTG
TCATGCCCCGAATGAACGGCTACGAAGTTTGTCGGCGGTTAAAATCCGATCCAAAAACCCAAAATGTCCCTGTGGTTATG
TGTTCTTCCAAAGGCGAAGAATTTGATCGTTACTGGGGTATGAAACAGGGTGCAGATGCCTACATAGCCAAACCGTTTCA
ACCAACCGAGTTGGTAGGAACAGTCAAACAACTGCTGCGAGGATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

76.86

100

0.769
  micA Streptococcus pneumoniae Cp1015

39.167

99.174

0.388
  pilG Acinetobacter baumannii strain A118

41.228

94.215

0.388
  vicR Streptococcus mutans UA159

38.333

99.174

0.38
  pilL-C Synechocystis sp. PCC 6803

37.5

99.174

0.372

Multiple sequence alignment